Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02494 ATGGATCGCTCTGCTATGGCTGTTGGGCCAGGAATGGATATGCCGATCATGCATGACAGTGACCGCTACGAACTCGTGCGTGACATTGGTTCTGGTAACTTCGGTGTGGCCAGGCTCATGAGGGACAAGCACACCGAGGAACTTGTCGCTGTTAAGTATATTGAGAGAGGTGAAAAGATAGATGAAAATGTACAGAGAGAAATTATAAATCACAGATCTCTGAGGCATCCTAATATTGTGAGGTTCAAGGAGGTTATATTGACACCAACACATTTGGCGATTGTGATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGGCGATTCAGTGAGGATGAGGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATGCAAGTTTGCCATCGAGATTTGAAGTTGGAAAACACATTGTTGGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGCTATTCAAAGTCCTCAGTGCTACATTCTCAACCAAAATCTACAGTGGGAACCCCTGCATATATCGCTCCAGAAGTTTTGCTCAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCATATCCATTTGAGGATCCCGAGGAACCTAAAAATTTCCGCAAGACAATACACAGGATTTTGAATGTTCAGTACTCAATTCCAGACTATGTTCATATATCTCCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTTGCTGATCCTGCAAAAAGAATAAGTATTCCTGAGATTAGAAACCATGAGTGGTTTTTGAAGAACCTTCCAAGTGATCTGATGGATGGGAATAACAACAACCAGTTTGAGGAGCCTGATCAACCAATGCAAAGCATTGAAGAAATCATGCAGATAATCAGAGAGGCAACAATTCCTGCAGCTGGATCTCAGTCTCCCAACCATGATCTTACTGGTAGCTTGGATATTGATGAGGACATGGATACAGATCCTGATCTTGACTTAGATAGCAGTGGAGAAATAGTGTATGCTATGTAA 1077 0.428 MDRSAMAVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDKHTEELVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLISRIFVADPAKRISIPEIRNHEWFLKNLPSDLMDGNNNNQFEEPDQPMQSIEEIMQIIREATIPAAGSQSPNHDLTGSLDIDEDMDTDPDLDLDSSGEIVYAM 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02494 358 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02494 358 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Viun3g02494 358 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Viun3g02494 358 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02494 358 CDD STKc_SnRK2-3 22 278 - -
Viun3g02494 358 SUPERFAMILY Protein kinase-like (PK-like) 15 294 IPR011009 -
Viun3g02494 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Viun3g02494 358 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02494 358 PANTHER SERINE/THREONINE KINASE 22 304 - -
Viun3g02494 358 MobiDBLite consensus disorder prediction 318 351 - -
Viun3g02494 358 FunFam Serine/threonine-protein kinase SRK2E 99 287 - -
Viun3g02494 358 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
Viun3g02494 358 Gene3D Transferase(Phosphotransferase) domain 1 99 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02494 Viun-Chr3 23838926 23842322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02494 22 285 CBL-interacting serine-threonine protein kinases AT5G25110 45.455 2.52e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Viun3g02494 Pkinase 3.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02494 K14498 - gmx:100806771 682.559