Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02474 ATGGTGAACGACTTCATTGTTTGCATTGATCGAATAATAGCCTCCACGGCCTGTTTTGGATCACTGGATGCAAGAAACTGTGATCATGGAGTTCATCCTATGATACCCGTTTCTGACAATGCTGGAGAAGGGAGTTCCTCTTCTCCAAACATGTATGATGAAGATGATGTTGTTGTTGTTGTTGAGTGCAGAATATGCCAGGAAGAAGATCAAGTCCAAGCCATGGAGGCACCTTGTTCTTGTAATGGCACTCTCAAGTTTGCTCATAGGAATTGTATCCAGAGATGGTGCAATAAGAAAGGAAATACAATATGTGAAATCTGTAATCAGGAGTTTTCACCAAATTATTCTCCTCCACCAGTCAGAAGCAATGCAATTATGGCAATTGATATAAGGCAAGAATGGGGGCATAATGCTGATCTGCATGTGGCTATAGCTTCAGCTGAGCACCAGTTCCTGCAAACTGAGTATGAAGATTACGCCATGTCACAAACCAGTAGCATTGCTTGCCTACGATCTGCCACTTTCTTGTTGCTGATAATTTTGCTTGTACGCCAAGCTTTAATGGTCACAAAGAACTCCACAACTGGACAAGATGCTTCAATAATCTTTAATCTTGAGATGTCACTTCTTCAATTTGCTGGTGTTCTTTTGCCATGCTATGCAATGGCACGATCCTGGTATGCAATACAAAACCGAAGAAGACAGGTTTAA 714 0.416 MVNDFIVCIDRIIASTACFGSLDARNCDHGVHPMIPVSDNAGEGSSSSPNMYDEDDVVVVVECRICQEEDQVQAMEAPCSCNGTLKFAHRNCIQRWCNKKGNTICEICNQEFSPNYSPPPVRSNAIMAIDIRQEWGHNADLHVAIASAEHQFLQTEYEDYAMSQTSSIACLRSATFLLLIILLVRQALMVTKNSTTGQDASIIFNLEMSLLQFAGVLLPCYAMARSWYAIQNRRRQV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02474 237 Pfam RING-variant domain 63 108 IPR011016 GO:0008270
Viun3g02474 237 Pfam Protein of unknown function (DUF3675) 114 227 IPR022143 -
Viun3g02474 237 ProSiteProfiles Zinc finger RING-CH-type profile. 55 115 IPR011016 GO:0008270
Viun3g02474 237 SMART ringv_2 62 109 IPR011016 GO:0008270
Viun3g02474 237 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 236 IPR033275 -
Viun3g02474 237 SUPERFAMILY RING/U-box 61 113 - -
Viun3g02474 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 118 IPR013083 -
Viun3g02474 237 CDD RING_CH-C4HC3_MARCH 63 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02474 Viun-Chr3 23432577 23437110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02474 53 108 C3H Transcription Factor Family AT2G37950 42.623 2.58e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02474 - - gmx:100791501 377.867