Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02468 ATGATAGCCAGCTCTTTCTGCAATGCTGATTCTATGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGAGCATAAAAGGAGTCCCTGCTCTGTTGACCAAAGCAGTTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCTATCAGCACTAAGGAGAGGAAGGAGAAGATTGGGGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGAATACATAGGATTCCTTCATAAACAACTGCTCAGTGCTCCATACCTTGAAACTTCAGCAGCAGCCAAGATGCAGGGTATGGAGTCATGCAGCCTGAGGAGTAGAGGGTTATGCCTTGTTCCTGTGTCATTTACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATCAAAACTACTACTTCACCCAAATTGGAGAATGATGTCTCTCAATTTCATTGA 498 0.4237 MIASSFCNADSMFSREEGIDVRKMMEHKRSPCSVDQSSYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQLLSAPYLETSAAAKMQGMESCSLRSRGLCLVPVSFTIGVAESNGADIWAPIKTTTSPKLENDVSQFH 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02468 165 CDD bHLH_AtbHLH_like 52 99 IPR045239 -
Viun3g02468 165 Gene3D - 43 116 IPR036638 GO:0046983
Viun3g02468 165 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Viun3g02468 165 SMART finulus 52 101 IPR011598 GO:0046983
Viun3g02468 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 101 IPR036638 GO:0046983
Viun3g02468 165 FunFam Transcription factor bHLH113 family 45 119 - -
Viun3g02468 165 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02468 Viun-Chr3 23388760 23393121 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02468 24 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 54.487 2.63e-52 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02468 - - vun:114178105 314.694