Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02460 ATGGAGCAGCCTAAAGTGGATTCTCAAGCCAGTTCAGCGTACCTGATCAAGTTAGAACTTTTGGCTGCTAAGAATCTTGTTGGTGCAAATTTAAATGGCACATCGGATCCTTATGCTATCATCACATGTGGCAATGAAAAGCGATTCAGTTCCATGGTCCCTGGTTCAAGAAATCCAATGTGGGGCGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTTCAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACTGTTCCGGTTGAAAGTGAAGGTCAGACTGGTGCAGTGTGGCATACTTTGGATAGTCCATCAGGGCAGGTTTGTCTTCATATAAAAACAATAAAACTATCTGGGAATTCTTCCAGGATAAATGGATATGGAGGAGCCAACCCCAGAAGAAGGATCCCACCCTTGGAAAGACAGGGGCCCACTGTAGTCCATCAAAAGCCAGGGCCTCTTCAGACAATATTTTCTCTTCATCCAGACGAGGTTGTTGATCATAGTTATTCTTGTGCACTTGAGAGGTCATTCTTGTACCATGGTCGTATGTATGTCTCAGCATGGCACATTTGTTTTCACTCCAATGTGTTCTCAAAGCAAATGAAGGTGCGTATTCCATTTGAAGATATAGATGAGATTCGACGGAGTCAACATGCATTTATTAATCCTGCTATAACAATTATACTTCGCATGGGTGCTGGAGGACATGGTGTCCCTCCTTTGGGAAGCCCTGATGGTAGGGTCAGATATATGTTCGCATCCTTTTGGAACAGGAATCATGCATTCAGAAATCTCCAGCGTGCTGCAAAGAATTTCCACGAAATGTTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAGCAGCGTGCACATAGCAGTTCTGTAAGAGGCAATAAACTGCTGGATAAGGCTCCTGTAGAAAGCATGTCTAAAACTGGAAAACTTCCACATTTTATCAAAGAAGAGGATTTAGTTGGTATATACAATGATGTTTTTCCCTGCACAGCGGAGCAGTTTTTTAACTTATTGTTGAATGACGGTTCAAATTTTACTAGCAAATATCGTTCAGTACGAAAGGACACTAATCTTGTGATGGGCCAGTGGCATACGGCAGACGAATATGATGGTCAAGTACGAGAGATAACCTTCAGATCACTTTGTAACAGCCCTATGTGCCCTCCAGATACAGCCATGACAGAGTGGCAACATCACGTTCTATCACCAGACAAGAAAAACCTGGTGTTTGAGACTGTGCAGCAGGCACATGATGTTCCATTTGGATCCTATTTTGAGGTACACTGTAAATGGAGCTTGGCGACAATTAATGAAAGCTCATGTAATCTGGACATCAAAGTGGGTGCACATTTCAAGAAATGGTGTGTTATGCAATCCAAAATAAAGTCAGGGGCAGTCAATGAGTACAAGAAGGAAGTTGAGGTCATGTTAGATGTTGCTCGATCGTTTATAAAATCAAATACTTCTAATGACGAGAACGATGAGGTCTCTTTGCCCCTTGCACTGACCCTGGAAAGCTGA 1572 0.4237 MEQPKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLHIKTIKLSGNSSRINGYGGANPRRRIPPLERQGPTVVHQKPGPLQTIFSLHPDEVVDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVRIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFHEMLEAEKKENAESEQRAHSSSVRGNKLLDKAPVESMSKTGKLPHFIKEEDLVGIYNDVFPCTAEQFFNLLLNDGSNFTSKYRSVRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLSPDKKNLVFETVQQAHDVPFGSYFEVHCKWSLATINESSCNLDIKVGAHFKKWCVMQSKIKSGAVNEYKKEVEVMLDVARSFIKSNTSNDENDEVSLPLALTLES 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02460 523 CDD C2 16 112 - -
Viun3g02460 523 SMART C2_3c 15 111 IPR000008 -
Viun3g02460 523 Gene3D - 164 283 IPR011993 -
Viun3g02460 523 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 125 IPR035892 -
Viun3g02460 523 Coils Coil 274 301 - -
Viun3g02460 523 Pfam C2 domain 17 111 IPR000008 -
Viun3g02460 523 FunFam BAG-associated GRAM protein 1 isoform X2 164 283 - -
Viun3g02460 523 Pfam VAD1 Analog of StAR-related lipid transfer domain 339 484 IPR031968 -
Viun3g02460 523 SMART gram2001c 163 229 IPR004182 -
Viun3g02460 523 Gene3D C2 domain 1 127 IPR035892 -
Viun3g02460 523 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Viun3g02460 523 ProSiteProfiles VASt domain profile. 335 505 IPR031968 -
Viun3g02460 523 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 1 513 IPR044655 -
Viun3g02460 523 PRINTS C2 domain signature 55 68 IPR000008 -
Viun3g02460 523 PRINTS C2 domain signature 76 84 IPR000008 -
Viun3g02460 523 PRINTS C2 domain signature 31 43 IPR000008 -
Viun3g02460 523 Pfam GRAM domain 166 234 IPR004182 -
Viun3g02460 523 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02460 Viun-Chr3 23300541 23310532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02460 2 100 C2H2 Transcription Factor Family AT4G21160 24.242 1.24e-07 52.0