Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02458 ATGAGCTGGACCGTTGATCCCGCGCTCTTCGCTTTTCTTTTTCCCTCTCTATGGGAGATCAAAGTCGCTGTCGCGGCCTCTGTCTTCGTCATAATCGCCTATCGCTTCTTCACTGCCCGAACCGCACATTTCCACACGGATCCATCGCTTTCCGACAATTCTGCCGCAGTCGATGTCGCCGACGATAAGGACAAGGACAAGATGGAGCAGCCTAAAGTGGATTCTCAAGCCAGTTCAGCGTACCTGATCAAGTTAGAACTTTTGGCTGCTAAGAATCTTGTTGGTGCAAATTTAAATGGCACATCGGATCCTTATGCTATCATCACATGTGGCAATGAAAAGCGATTCAGTTCCATGGTCCCTGGTTCAAGAAATCCAATGTGGGGCGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTTCAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACTGTTCCGGTTGAAAGTGAAGGTCAGACTGGTGCAGTGTGGCATACTTTGGATAGTCCATCAGGGCAGGTTTGTCTTCATATAAAAACAATAAAACTATCTGGGAATTCTTCCAGGATAAATGGATATGGAGGAGCCAACCCCAGAAGAAGGATCCCACCCTTGGAAAGACAGGGGCCCACTGTAGTCCATCAAAAGCCAGGGCCTCTTCAGACAATATTTTCTCTTCATCCAGACGAGGTTGTTGATCATAGTTATTCTTGTGCACTTGAGAGGTCATTCTTGTACCATGGTCGTATGTATGTCTCAGCATGGCACATTTGTTTTCACTCCAATGTGTTCTCAAAGCAAATGAAGGTGCGTATTCCATTTGAAGATATAGATGAGATTCGACGGAGTCAACATGCATTTATTAATCCTGCTATAACAATTATACTTCGCATGGGTGCTGGAGGACATGGTGTCCCTCCTTTGGGAAGCCCTGATGGTAGGGTCAGATATATGTTCGCATCCTTTTGGAACAGGAATCATGCATTCAGAAATCTCCAGCGTGCTGCAAAGAATTTCCACGAAATGTTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAGCAGCGTGCACATAGCAGTTCTGTAAGAGGCAATAAACTGCTGGATAAGGCTCCTGTAGAAAGCATGTCTAAAACTGGAAAACTTCCACATTTTATCAAAGAAGAGGATTTAGTTGGTATATACAATGATGTTTTTCCCTGCACAGCGGAGCAGTTTTTTAACTTATTGTTGAATGACGGTTCAAATTTTACTAGCAAATATCGTTCAGTACGAAAGGACACTAATCTTGTGATGGGCCAGTGGCATACGGCAGACGAATATGATGGTCAAGTACGAGAGATAACCTTCAGATCACTTTGTAACAGCCCTATGTGCCCTCCAGATACAGCCATGACAGAGTGGCAACATCACGTTCTATCACCAGACAAGAAAAACCTGGTGTTTGAGACTGTGCAGCAGGCACATGATGTTCCATTTGGATCCTATTTTGAGGTACACTGTAAATGGAGCTTGGCGACAATTAATGAAAGCTCATGTAATCTGGACATCAAAGTGGGTGCACATTTCAAGAAATGGTGTGTTATGCAATCCAAAATAAAGTCAGGGGCAGTCAATGAGTACAAGAAGGAAGTTGAGGTCATGTTAGATGTTGCTCGATCGTTTATAAAATCAAATACTTCTAATGACGAGAACGATGAGGTCTCTTTGCCCCTTGCACTGACCCTGGAAAGCTGA 1773 0.4365 MSWTVDPALFAFLFPSLWEIKVAVAASVFVIIAYRFFTARTAHFHTDPSLSDNSAAVDVADDKDKDKMEQPKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLHIKTIKLSGNSSRINGYGGANPRRRIPPLERQGPTVVHQKPGPLQTIFSLHPDEVVDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVRIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFHEMLEAEKKENAESEQRAHSSSVRGNKLLDKAPVESMSKTGKLPHFIKEEDLVGIYNDVFPCTAEQFFNLLLNDGSNFTSKYRSVRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLSPDKKNLVFETVQQAHDVPFGSYFEVHCKWSLATINESSCNLDIKVGAHFKKWCVMQSKIKSGAVNEYKKEVEVMLDVARSFIKSNTSNDENDEVSLPLALTLES 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02458 590 Gene3D C2 domain 60 196 IPR035892 -
Viun3g02458 590 Pfam GRAM domain 233 301 IPR004182 -
Viun3g02458 590 FunFam BAG-associated GRAM protein 1 isoform X2 231 350 - -
Viun3g02458 590 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 8 580 IPR044655 -
Viun3g02458 590 SMART gram2001c 230 296 IPR004182 -
Viun3g02458 590 Pfam VAD1 Analog of StAR-related lipid transfer domain 406 551 IPR031968 -
Viun3g02458 590 Coils Coil 341 368 - -
Viun3g02458 590 SMART C2_3c 82 178 IPR000008 -
Viun3g02458 590 Gene3D - 231 350 IPR011993 -
Viun3g02458 590 Pfam C2 domain 84 178 IPR000008 -
Viun3g02458 590 ProSiteProfiles VASt domain profile. 402 572 IPR031968 -
Viun3g02458 590 PRINTS C2 domain signature 143 151 IPR000008 -
Viun3g02458 590 PRINTS C2 domain signature 122 135 IPR000008 -
Viun3g02458 590 PRINTS C2 domain signature 98 110 IPR000008 -
Viun3g02458 590 CDD C2 83 179 - -
Viun3g02458 590 ProSiteProfiles C2 domain profile. 64 179 IPR000008 -
Viun3g02458 590 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 81 192 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02458 Viun-Chr3 23300348 23310531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02458 29 167 C2H2 Transcription Factor Family AT4G21160 22.302 3.72e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02458 - - gmx:100789923 1070.46