Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun3g02430 | ATGGCCAAGTTGGCCAAGTTGTACATTAAGGAAATTGTGAGGTTGTATGGAGTAGCTTCGAGCATAGTCTCCAATAGAGATCCGCATCCTGAACTAACACAGCACATCACAACACATTCACCACTTACTAACTTTCCTACCAGTCTCTTCTTCCCCACCGGTCTTTCACCATCTCATCACTTCATTAACTCCATCAACACCAACATTATTCTCTCACTCTCTCACACACCCACCATCACTATCACCATGTCTACACTCTTCAACATTCTTCTATTGTTTCTCACATTTTCTTCTTTTTCTTCTTCTTCTTCTCCTTCACACCCTCGCCGTGTCCTTCACCAACCCCTCTTCCCCAGAATCTCTATCCCTCCAACACATCCACCAGCATTATCCCCTCAACCCCAAAAGCAACACCATTTACCCAAGTTTCCATTTTCGTCTTCTTCATCGTTCTCGCCTCCACCGCCGCAAAAACCTTTCTTTCCTTCTTACCATTCCCCACCACTCCCTCCTTCCCCCACCGTCGTTGCCACTTTCCCCGCCAACATCTCCTCCCTCCTCCTCCCCCACCCCTACTCCCACCACCACCGCTCCGCCGCCGCCCTCGCCGTCTCCCTCTCCCTCTTCTCCCTCGCCCTCCTCGCCGCCGCCGCGTTCTTTCTCCTCCACCGCCGCCGCGCTAAAAGGACTTCCTCCTCCGATGCCACCCATGACGACGACGACGAGAAAGCCTCGAGATCCGACAGCCTCCGTCTGTTCCCGTCGAACGCCGCCGCCTCCGACGGCGTCGATAGAAAACCCCGCGGAAAGTCCTCCCCGACGTCGGAGCTGCTCTACCTCGGCACGGTAGCGAACTCGGTGAACTCAACGCTAGACACAAGCTCCAGTCACCACGACGACGGTTTCCGGCCACCGTATCAAAAACTCGGCGATTCGCCGGAACTGAACCCACTTCCACCTCTGCCACGTCACAAATTCAAACCGTGGATGAATGAAGATGACGATGATAAAAATGTGAAAGAAAAAGTGGAACAACAAGAAGAGGCAGAAAAAGAAGAAGAAGATGAACAGTTTTTTTCTCCAAGAAGTTCTTCTGGTGGGAACAATCAACATAGTCCTCCTTATCCTTCAGCTGTTGCTGCTTCAAGTTCGCGCGTGGATAATAAAATCGGTTCTACAAGCTTCACTTCTCGAACCCCTTCGTACCCTCGTTCCAATTCCCTCTCTTTCTCTCGTTCCCCGTCTCTTAATTTCAGCCCCGCAAGTGTTAAATCACTCCCTCCACACAACCCTGCTTCTCCTTCTTTCTCTTCATCATCTTCTTCTCCCAGGGAAGAATGGCATGTTCCTTCAAGGGACCAAAATTCTCCGGCGAGATATTTACCTCCTCCACCTCCGCCGCCACCTCCGCCGCCGCGGATTTGGGAAGCTCCAGTTTCTGTTAGGAAAGTGAGTGAGGAGACACCGAAGCCAAAGTTGAAAGCTTTACATTGGGATAAAGTTAAGGCCAGCTCGGACAGGGTCATGGTTTGGGATCAGTTGAGACCCAGTTCTTTTCAGTTGAACGAGGATATGATTGAAACACTTTTTATGGCAAATAATTCCAAGGAGGGTGTGGGGGTTGCGGTTAGAGATAATGCTCGACGCCACGTAGTTCATTCTGCTTCTCCCATGCCCATGGAGAATAGGGTCCTTGACCCTAAGAAGTCTCAGAACATCGCCATTTTGCTTAGGGCTCTCAATGTTACCATTGATGAAGTTTGTGATGCCCTCAGAGAAGGCAATTGTGATACGTTGGGAACAGAACTTCTTGAAAGTTTGTTAAAGATGGCTCCAACTAAAGATGAAGAATCTAAGCTGAAGGAATTTCAAGATGAATCGCCTTTCAAGCTTGGCCCAGCTGAGAAATTTCTCAAAGTTGTTCTTGATATACCTTTCGCTTTCAAGAGGGTGGATGCTATGCTCTACATTGCCAATTTTGATTCAGAATTAGAATACCTTAAAAAGTCCTTTGAAACTCTGGAGGTGGCCTGTGAGGAATTAAAGAATAGTCGAATGTTTTTGAAGATACTTGAAGCAGTGTTAAGAACAGGAAATAGAATGAATGTTGGCACCAATCGTGGTGATGCTCATGCGTTCAAACTGGACACACTTTTGAAGTTAGCTGATATTAAAGGAACTGATGGAAAAACTTCTCTGTTGCATTTTGTTGTACAGGAAATTGTCAGAACCGAGGGTTCTCATGTTTCTGGTTCTAACCATTACCATGCTTCTGACAATGTCCACCAATACAGTCTCCAAGATGAGGTTGACTTTAAAAAGCTTGGCCTGCAAATTGTTTCGGGACTGAGCGGGGAGCTCAGCAATGTTAAAAAAGCAGCTGCTATGGATTCAGACATGCTCAGTAGTGATGTTGCCAAACTTGCCAGAGGAATTGACAAAGTTGTGCAAGTAGTGAAATTGAATGAGGAGTCACCTTTGAAAGAAACTAACCAAAAGTTTTCGGAGGCAATGAAAGGTTTCTTGGAAAGGGGAGAGCAAGAGATTTCAACAATCCAGGCCCAAGAGAAAAATGGCCTCTCTTCAGTGAAGGAGATAACTGAGTATTTCCATGGAAATTCAGCAAAGGAAGAAGCTCATCCATTTAGAATTTTTATGGTTGTGAGGGATTTCCTTTCCATTCTAGATGGTGTTTGCAAGGAAGTTGGTAAAGTGAATGAGAGAACTTTGGTTGGTTCTCGTCATTCTGTGATGCCTGCAAATCCTGTAATGCAAACCTTTTTTCCTGAGATTATTGGTAAGCAACCATCTGATTCCTCTGAATCTGACTAA | 2832 | 0.4672 | MAKLAKLYIKEIVRLYGVASSIVSNRDPHPELTQHITTHSPLTNFPTSLFFPTGLSPSHHFINSINTNIILSLSHTPTITITMSTLFNILLLFLTFSSFSSSSSPSHPRRVLHQPLFPRISIPPTHPPALSPQPQKQHHLPKFPFSSSSSFSPPPPQKPFFPSYHSPPLPPSPTVVATFPANISSLLLPHPYSHHHRSAAALAVSLSLFSLALLAAAAFFLLHRRRAKRTSSSDATHDDDDEKASRSDSLRLFPSNAAASDGVDRKPRGKSSPTSELLYLGTVANSVNSTLDTSSSHHDDGFRPPYQKLGDSPELNPLPPLPRHKFKPWMNEDDDDKNVKEKVEQQEEAEKEEEDEQFFSPRSSSGGNNQHSPPYPSAVAASSSRVDNKIGSTSFTSRTPSYPRSNSLSFSRSPSLNFSPASVKSLPPHNPASPSFSSSSSSPREEWHVPSRDQNSPARYLPPPPPPPPPPPRIWEAPVSVRKVSEETPKPKLKALHWDKVKASSDRVMVWDQLRPSSFQLNEDMIETLFMANNSKEGVGVAVRDNARRHVVHSASPMPMENRVLDPKKSQNIAILLRALNVTIDEVCDALREGNCDTLGTELLESLLKMAPTKDEESKLKEFQDESPFKLGPAEKFLKVVLDIPFAFKRVDAMLYIANFDSELEYLKKSFETLEVACEELKNSRMFLKILEAVLRTGNRMNVGTNRGDAHAFKLDTLLKLADIKGTDGKTSLLHFVVQEIVRTEGSHVSGSNHYHASDNVHQYSLQDEVDFKKLGLQIVSGLSGELSNVKKAAAMDSDMLSSDVAKLARGIDKVVQVVKLNEESPLKETNQKFSEAMKGFLERGEQEISTIQAQEKNGLSSVKEITEYFHGNSAKEEAHPFRIFMVVRDFLSILDGVCKEVGKVNERTLVGSRHSVMPANPVMQTFFPEIIGKQPSDSSESD | 943 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun3g02430 | 943 | Coils | Coil | 664 | 684 | - | - | |
| Viun3g02430 | 943 | MobiDBLite | consensus disorder prediction | 290 | 476 | - | - | |
| Viun3g02430 | 943 | PANTHER | FORMIN-RELATED | 93 | 934 | IPR027643 | GO:0003779|GO:0030036|GO:0045010|GO:0051015 | |
| Viun3g02430 | 943 | MobiDBLite | consensus disorder prediction | 228 | 248 | - | - | |
| Viun3g02430 | 943 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 462 | 908 | - | - | |
| Viun3g02430 | 943 | SMART | it6_source | 483 | 910 | IPR015425 | - | |
| Viun3g02430 | 943 | MobiDBLite | consensus disorder prediction | 360 | 445 | - | - | |
| Viun3g02430 | 943 | Pfam | Formin Homology 2 Domain | 486 | 895 | IPR015425 | - | |
| Viun3g02430 | 943 | MobiDBLite | consensus disorder prediction | 123 | 165 | - | - | |
| Viun3g02430 | 943 | Gene3D | Formin, FH2 domain | 489 | 917 | IPR042201 | - | |
| Viun3g02430 | 943 | MobiDBLite | consensus disorder prediction | 228 | 276 | - | - | |
| Viun3g02430 | 943 | Coils | Coil | 336 | 356 | - | - | |
| Viun3g02430 | 943 | MobiDBLite | consensus disorder prediction | 457 | 476 | - | - | |
| Viun3g02430 | 943 | MobiDBLite | consensus disorder prediction | 148 | 165 | - | - | |
| Viun3g02430 | 943 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 483 | 921 | IPR015425 | - | |
| Viun3g02430 | 943 | MobiDBLite | consensus disorder prediction | 326 | 347 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun3g02430 | Viun-Chr3 | 22571989 | 22581772 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun3g02430 | 479 | 935 | FH2 protein (formin) Gene Family | AT3G25500 | 65.795 | 0.0 | 609 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun3g02430 | - | - | vun:114175163 | 1622.45 |