Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02428 ATGGTTCACTCCTTCTATGAGAAAAGCTCTTCTTCTGGCTCTGATATTTCGGGGTTGTTCAATCCCACTTTGCAAACTGTTGGAGCCTCCAATGGTGATGTTGCAAACGGTGGCTTGTCATCGTCACATTCTTTGGTTTATGAGAGTGAGAAGGGAGAACTGGTGAAGTTCTCTTCAGCTGCAAGGGTAGGGAAGAATGAGATTTGTGAGGCCAAAGCTTTGGCTGCTTTGAAGAACCACAGTGAAGCAGAGAGAAGAAGGAGGGAGAGAATAAACGGTCATCTTGCAACACTACGTGGCCTTGTACCATCCACTGAAAAGATGGATAAAGCCACTTTACTGGCTGAAGTGATAAAGCAAGTGAAGGAATTGAAGAAAAGTGCAGTAGAAGCGAGCAAGGGTTTTGTAATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCATGTGATGGATCCATGTCTTACAGTGCAACTATTTGCTGTGATTTTCGACCTGAAATAATATCTGACCTAAGACAAACCCTTGATTCCCTTCCACTGCATCTAGAGAAGGCAGAAATTTCAACTTTGGCAGGAAGAATGAAGAACGTGTTCGTCTTCACATGTTGCAAAGGGAACGTTAGTATTGACACTGAAGCATCCCAAGCTGTTGCAAGAACTGTTCACCAGGCACTGTGTTCTGTGCTTGAAAAGGCTTCTGCCTCACTTGAGTTCTCACCAAGAACATCACATGCTAACAAGAGGAGAAGACTGTGCTTTATTGAAACATCCACTTCCTCATGCAACCATGGATCTTGTCTGTGTTGA 807 0.4387 MVHSFYEKSSSSGSDISGLFNPTLQTVGASNGDVANGGLSSSHSLVYESEKGELVKFSSAARVGKNEICEAKALAALKNHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLAEVIKQVKELKKSAVEASKGFVIPMDADEVKVEPCDGSMSYSATICCDFRPEIISDLRQTLDSLPLHLEKAEISTLAGRMKNVFVFTCCKGNVSIDTEASQAVARTVHQALCSVLEKASASLEFSPRTSHANKRRRLCFIETSTSSCNHGSCLC 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02428 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 127 IPR036638 GO:0046983
Viun3g02428 268 Gene3D - 72 133 IPR036638 GO:0046983
Viun3g02428 268 SMART finulus 81 130 IPR011598 GO:0046983
Viun3g02428 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Viun3g02428 268 Pfam Helix-loop-helix DNA-binding domain 79 124 IPR011598 GO:0046983
Viun3g02428 268 PANTHER TRANSCRIPTION FACTOR BHLH30 39 255 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02428 Viun-Chr3 22547564 22551174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02428 72 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 40.476 3.06e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g02428 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02428 - - gmx:100804756 440.269