Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02426 ATGGACTTCTCGAAGAAGCGCAAGACCGAAGAGAACGGCGATGCTGATTCTCTGTCGTCACCACCCTCCCAAGCATTCCCCACCGCCACCGTCACCCCAGCCGCCCCCCTGGCCGCGGAAGACATCCGCAAGATCTTGCGTCCGTTTTCCCAGGAACAGCTCCTCGACCTTCTCCAATCAGCATCGCTACGCCACTCCGATGTCCTCGACGCCGTGCGCGCCGTCGCGGACCGCGACTCCACTCTCCGTAAGCTGTTCGTACGTGGACTTGCCGGCGAAACCACCAGCGAGACCCTGCGCAGCGTGTTCTCCGCGTTCGGCGAACTCGACGAGGCCATCGTGATCTTCGACAAGGCCACGGGACGGTCCAAGGGCTATGGCTTCGTGGTGTTTCGCCACGTGGATGGCGCCATCCTCGCGCTGAAGGACCCCAGCAAGAAAATCGACGGACGCATGACGGTAACGCAACTAGCCGCTGCTGGTGGACCTGGGGGCTCAGGCGACGTATCAGCAAGGAAGGTTTTCGTGGGGAACGTGCCGTTCGAGATCTCCTCGGATAAACTACTGAGCGAATTCCTTAAGTTCGGAGAGGTCGAGGAAGGGCCTCTAGGGTTTGACAAATCGAGCGGAAAATCGAGGGGTTTCGCTTTTTTCGTTTATAAAACGGAGGAAGGCGCGAGGGCTTCGTTGGCGGAACCGGTTAAGACCATTGATGGGCACCAAGTGATTTGCAAATTGGCTGTGGATAGCAAAAAGACGAAACCGTTTGGAGGGGATCAACATCAGCATCAACACACGCAGCATCAGCAGCAACAACAACAGCATCCGCAGCAACAGATGCAACAACAAGGTCCTATGATGGTACCTCAGTATGGTGGATATGGTGGGAATGGCTATGGAATACAGCACCCGGTGCCACCATATAACAATCCGGTTCAGGTTTCTGGTGGTGGTGGGTATGGCCATGGGATTGGTGGTGGATATGGTAATTCGCAGATGGGTGGGCCGGTTTCCGGGGATTACGGAGCTAGACTGCCTCCCAATTCTGGTGGGGGGTTCCCTGAAGGCTCCCAGTATGGCTACCCTGCTTCTTCCACGCTTCCACCACAGCAGCAAGTGCCAATGCCGAGACCTCCTCCTGGAGGAATGTACCAAGGCGTACCACCCTATTATTGA 1176 0.5672 MDFSKKRKTEENGDADSLSSPPSQAFPTATVTPAAPLAAEDIRKILRPFSQEQLLDLLQSASLRHSDVLDAVRAVADRDSTLRKLFVRGLAGETTSETLRSVFSAFGELDEAIVIFDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLAAAGGPGGSGDVSARKVFVGNVPFEISSDKLLSEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLAEPVKTIDGHQVICKLAVDSKKTKPFGGDQHQHQHTQHQQQQQQHPQQQMQQQGPMMVPQYGGYGGNGYGIQHPVPPYNNPVQVSGGGGYGHGIGGGYGNSQMGGPVSGDYGARLPPNSGGGFPEGSQYGYPASSTLPPQQQVPMPRPPPGGMYQGVPPYY 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02426 391 SUPERFAMILY RNA-binding domain, RBD 169 263 IPR035979 GO:0003676
Viun3g02426 391 MobiDBLite consensus disorder prediction 1 29 - -
Viun3g02426 391 MobiDBLite consensus disorder prediction 262 286 - -
Viun3g02426 391 MobiDBLite consensus disorder prediction 369 391 - -
Viun3g02426 391 SMART rrm1_1 173 245 IPR000504 GO:0003723
Viun3g02426 391 SMART rrm1_1 84 156 IPR000504 GO:0003723
Viun3g02426 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 160 IPR000504 GO:0003723
Viun3g02426 391 MobiDBLite consensus disorder prediction 253 299 - -
Viun3g02426 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 151 IPR000504 GO:0003723
Viun3g02426 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 241 IPR000504 GO:0003723
Viun3g02426 391 MobiDBLite consensus disorder prediction 15 29 - -
Viun3g02426 391 FunFam UBP1-associated protein 2C isoform A 66 168 - -
Viun3g02426 391 PANTHER GEO13361P1-RELATED 62 300 - -
Viun3g02426 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 253 IPR000504 GO:0003723
Viun3g02426 391 Gene3D - 166 286 IPR012677 -
Viun3g02426 391 SUPERFAMILY RNA-binding domain, RBD 77 162 IPR035979 GO:0003676
Viun3g02426 391 MobiDBLite consensus disorder prediction 335 391 - -
Viun3g02426 391 Gene3D - 74 161 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02426 Viun-Chr3 22522955 22527551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02426 155 247 C2H2 Transcription Factor Family AT2G19380 31.183 2.42e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02426 K12741 - gmx:100816590 553.518