Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02373 ATGTCTTCTTCCAATAAACACTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATTCCCAAAACCAATGGCAGCATGACAACAACTCTTCTGTGTTGTCCACTGGATGCCAAAGAAGCCCTTATACTCCAGGAAACGAAGAGAAAGGTCCAGAACCAAAGGCAAGATGGAATCCAAAGCCCGAGCAAATTCGCATTCTAGAAGCCATCTTCAATTCTGGGATGGTGAATCCCCCAAGGGATGAGATAAGGAAGATCCGGGTGCAGTTGCAGGAGTATGGCCAAGTTGGTGATGCAAATGTCTTCTACTGGTTCCAGAATCGCAAATCCAGGAGCAAGAACAAGCTCCGCCACATCCAAAACTCAAAGAACCACAACACAGAAAGAGAAATCCCTCAAATCACACCATCTTCAACCTCATCCTCTTCCTCTGACAAATCCTACTCAAAAGAATTGGTGCACCCAAATGCCATCTCCTTTGGCTTCTCAAATGTCAATGATGCAGTTCCTAATTCCCCCACTGCTTCTGTGAATCAGACTTATTTTCAGTCTCACAACCACAATAACACCACTTTGCTGCCACCAGCGATTCAGTCTTTCTCATTCCCTTTGCACAACAATGATCAAGGCGTAATATTTAACAATACCATCACAACGCATGGATTTCCTGTCCCTCACTTCTCCAACAATATCATGCAATCTCAACCAAATGTTGGACCTAGCAGTGGTTTTTTTCTCAACGAGATCATCAACCATGGAACCTTCTCAAAGAAAGACCAAGATCAGGAAAAGGCTTTAAGATCAACAACAAGTGTTCCCCCAATCTCAACTCTTCCATGTCCAATCACCCAACTTCAAGGTGTAGGTGTTGGTGATGAGGTTACAGGAGATAGAGCAAAATGTATAGTTTTCATTAACGATGTTGCATTTGAGGTAATGATGGGACCCTTCAACGTGCGCCAAGCCTTTGGAGATGAAGCCGTGCTTATCCACTCTTCCGGCCCTGTCCCCACCGACGACTGGGGCATTACCCTCCATCCGCTGCAGCATGGTGCTTACTATTATCTGATATAA 1071 0.4491 MSSSNKHWPSMFKSKPCNSQNQWQHDNNSSVLSTGCQRSPYTPGNEEKGPEPKARWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKNKLRHIQNSKNHNTEREIPQITPSSTSSSSSDKSYSKELVHPNAISFGFSNVNDAVPNSPTASVNQTYFQSHNHNNTTLLPPAIQSFSFPLHNNDQGVIFNNTITTHGFPVPHFSNNIMQSQPNVGPSSGFFLNEIINHGTFSKKDQDQEKALRSTTSVPPISTLPCPITQLQGVGVGDEVTGDRAKCIVFINDVAFEVMMGPFNVRQAFGDEAVLIHSSGPVPTDDWGITLHPLQHGAYYYLI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02373 356 MobiDBLite consensus disorder prediction 125 147 - -
Viun3g02373 356 SUPERFAMILY Homeodomain-like 47 117 IPR009057 -
Viun3g02373 356 SMART HOX_1 51 118 IPR001356 GO:0003677
Viun3g02373 356 CDD homeodomain 52 114 IPR001356 GO:0003677
Viun3g02373 356 MobiDBLite consensus disorder prediction 1 59 - -
Viun3g02373 356 FunFam WUSCHEL-related homeobox 11 53 120 - -
Viun3g02373 356 Pfam Homeodomain 53 113 IPR001356 GO:0003677
Viun3g02373 356 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 356 IPR044557 GO:0003700|GO:0050793
Viun3g02373 356 MobiDBLite consensus disorder prediction 1 41 - -
Viun3g02373 356 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Viun3g02373 356 Gene3D - 53 118 - -
Viun3g02373 356 MobiDBLite consensus disorder prediction 112 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02373 Viun-Chr3 21520387 21522864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02373 1 356 Wox Gene Family AT5G45980 39.891 3.56e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Viun3g02373 Homeodomain 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02373 - - gmx:100777643 511.531