Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02366 ATGAATTTCCCTCTAGTACTTCCAACAATTTGGCTCTCCTATTTGTTTTTACTTTCCTTTGTTCTCATTACGTGTTGCCAAGTTGAGGCTACAGATGGAGACAGTGAAGTCATATCTGTAGGTGCAATAATTGATGATAACTCTCGCATTGGGAAAGAACAGCTTGTAGCCATGGAACTTGCAGCTCAAACTTATAATACCACTTCTAACACCTACAAGCTTCTTCTTCATTTTCAGCAACCCACCAAGGATCCCTTCAGACCCACTTCCCTTGCTAGAAGAATGATTAAAACGCAGAAGATGCAAGTGATTATAGGGATGCAGACATGGACAGAAGCGGCTTCAGTGGCTGAATTAGGACGCAAATCTCAAGTTCCTGTCATATCCTTTGCAGCTCCTTCCATTACCCCATCATTCATGCCAATTCGCTGGCCTTCCTTGGTAACAATGGCTCACAATGGCACTGCATATGCAAGATGTGTTGCAGATATGGTGCATGCTTTTAGTTGGCAGAGAGTAGTAGTGATTTATGAAGATGGAGAGTATGAGATGCTAGCACTGCTATCTGAGACCCTACAAGATGTTGGTTCACTGATCGAGTATCGTTTGGCTCTTCCATCTCCTTCTTATCTTTCCAATCCTGGGGAATTCATTCGCCAAGAGTTGTTTAAGGTGATTGAAAATACACAGTCCCGGGTGTTCATTGTTCTGCAATCATCATTAGAAATGGTGATTCATTTGTTCAGAGAAGCTTCAGAAATGGGACTTGTGGATGGAGAATCAGCTTGGATAATCCCAGAGAGCACAACTAATTTGCTTGATTCTGTCAACAAGTCTGCTATTTCCTACATGGAAGGAGCTTTAGGAATCAAGACCTACTACTCTGAACGTAGCAGTGAATATCAAAATTTTGAGGCTCGGTTCAGGAAATCTTTTCGTGCCAGGTATCCTGAGGAGGATAACAGCAACCCGGGATTTTATGCTCTGCAAGCACATGATAGCATTAAAATTGTTGCACAAGCAATAGATAGAATGGCGAGTGGCAGAAACACTCTGCTAAGAGAAATACTTTCTAGCAATTTCGTTGGCTTAAGTGGAGAAATTGGATTCGAAGCAGCGCAGCTTTTGCAGAATCCCACTTTCAGGATTGTCAATGTAGATACGAAGAATTACAGAGAGTTAGACTTTTGGACTCCTGAAGGTGGGTTCATGAGTACCCTTCCTACAGAAAAAGGTTCAGGTAGTGTTTCTAGGAACACAGAAAGTTTAAGTGGCGTTGTAATATGGCCAGGGAAACTAACAAGAATTCCAAAGGGCTGGAATCTGCCTACTAAACAAAAACCAATGAGAATAGCGATTCCTGGAAGAACCTCCTTTTCCAAGTTTGTCAAAGTTGATCATGACAAGCATACAAATTCATATGAATACACTGGATTCTGCATTGAAATTTTTGAGAAGGCGTTACCCCTGTTGGGGTATGACCTGCCATATGACTTCTATCCCGTGAATGCAAGCTATCCTGATCTGGTTCAACTGGTCTATAACAAGACTTATGAGGCTGTTGTTGGAGACGTGACCATATTAGAAGAAAGATTGCAATATGTAGATTTTACGGTGCCATATGCAGAATCGGGGTTGTCAATGATAGTTACGGAGAAGTCGGAAGATTCGACATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGTGGCAACCGGTGCCTTGTTGATGTACACAATGATAGTTGTTTGGTGCCTGGAGCGGAAACCCAATCCAGATTTTCATGGCGATTTGAAAAGCCAGATCAGCACTGCACTTATGTTTACTTTCTCCTCTCTATTCTTCGCTCACAGGGAGAAAATCTATAGTGATTTAACTCGAGTGGTGATGGTGTCATGGCTGTTTCTAGTTTTGATTCTTAACTCAAGCTACACTGCTAGTCTTTCTTCCATGCTCACAGTTCAACGACTGCGACTAAATGTGACTGACATTGAGTTTCTGAAGAAGAACAACATGAAAATTGGTTGTGACGGCGACTCATTTGTTAAGACATACCTAGAGAAAGTCGAAGACTTCAAGCCAGAGAACATCGTACACATTGATAATGAATATAGCTACGAGGATGCATTCAAAAATAATTCAATTGCAGCAGCTTTTCTCGAATTACCCTATGAAAAAGTATATATGAGTAAATATTGCAAGGGATTCTCTGCCTTTGTACCTACCACCAAATTCGGAGGTCTTGGATTTATGTTCCGGAAAGGCTCCCCAATGGCCAGAGACTTTTCCAAAGCTATACTGACGCTCTTAGAGCGGGGAGAAATAAAGAAGTTAGAAGACAAATGGTTGAACTCTGCAGATGACTGCTCCAACAATTCGACCTCCGAGAGTTCAGAAAGTTTGAGGCTTGGAAGTTTCTGGGTTCTGTACGTCATTTCTGGTGCCACTTCTACTATTTGTTTTCTTCTTTACACCATCCAGTCGCGGAAATCTAGTCACACATCCCAAGATGAGGCAGAAGAACGTAATGGCAACCTTAGTGATGAAAGTCGATGGAAAAGGATGTTTGTTATAGCAAAGCAGATCTACAGCAGAAAGCATGCACCACTTATACACGACCATCAGCTGCCAATGCCTCCACAATTACCAGATATCATAATGGTGTCTTCCCCACCAACGGTTACTATTCACAACTCTTGA 2703 0.4203 MNFPLVLPTIWLSYLFLLSFVLITCCQVEATDGDSEVISVGAIIDDNSRIGKEQLVAMELAAQTYNTTSNTYKLLLHFQQPTKDPFRPTSLARRMIKTQKMQVIIGMQTWTEAASVAELGRKSQVPVISFAAPSITPSFMPIRWPSLVTMAHNGTAYARCVADMVHAFSWQRVVVIYEDGEYEMLALLSETLQDVGSLIEYRLALPSPSYLSNPGEFIRQELFKVIENTQSRVFIVLQSSLEMVIHLFREASEMGLVDGESAWIIPESTTNLLDSVNKSAISYMEGALGIKTYYSERSSEYQNFEARFRKSFRARYPEEDNSNPGFYALQAHDSIKIVAQAIDRMASGRNTLLREILSSNFVGLSGEIGFEAAQLLQNPTFRIVNVDTKNYRELDFWTPEGGFMSTLPTEKGSGSVSRNTESLSGVVIWPGKLTRIPKGWNLPTKQKPMRIAIPGRTSFSKFVKVDHDKHTNSYEYTGFCIEIFEKALPLLGYDLPYDFYPVNASYPDLVQLVYNKTYEAVVGDVTILEERLQYVDFTVPYAESGLSMIVTEKSEDSTWMFMKPFTWQMWVATGALLMYTMIVVWCLERKPNPDFHGDLKSQISTALMFTFSSLFFAHREKIYSDLTRVVMVSWLFLVLILNSSYTASLSSMLTVQRLRLNVTDIEFLKKNNMKIGCDGDSFVKTYLEKVEDFKPENIVHIDNEYSYEDAFKNNSIAAAFLELPYEKVYMSKYCKGFSAFVPTTKFGGLGFMFRKGSPMARDFSKAILTLLERGEIKKLEDKWLNSADDCSNNSTSESSESLRLGSFWVLYVISGATSTICFLLYTIQSRKSSHTSQDEAEERNGNLSDESRWKRMFVIAKQIYSRKHAPLIHDHQLPMPPQLPDIIMVSSPPTVTIHNS 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02366 900 SUPERFAMILY Periplasmic binding protein-like I 35 440 IPR028082 -
Viun3g02366 900 Gene3D - 457 557 - -
Viun3g02366 900 CDD GluR_Plant 447 784 - -
Viun3g02366 900 Pfam Ligand-gated ion channel 786 815 IPR001320 GO:0015276|GO:0016020
Viun3g02366 900 FunFam Glutamate receptor 448 559 - -
Viun3g02366 900 CDD PBP1_GABAb_receptor_plant 39 407 IPR044440 -
Viun3g02366 900 SUPERFAMILY Periplasmic binding protein-like II 425 785 - -
Viun3g02366 900 Gene3D - 329 452 - -
Viun3g02366 900 Gene3D - 731 792 - -
Viun3g02366 900 FunFam Glutamate receptor 157 322 - -
Viun3g02366 900 FunFam Glutamate receptor 558 688 - -
Viun3g02366 900 SMART GluR_14 450 786 IPR001320 GO:0015276|GO:0016020
Viun3g02366 900 Gene3D - 156 323 - -
Viun3g02366 900 Gene3D - 558 692 - -
Viun3g02366 900 Pfam Receptor family ligand binding region 56 387 IPR001828 -
Viun3g02366 900 PIRSF IGluLR_plant 346 875 IPR017103 -
Viun3g02366 900 PIRSF IGluLR_plant 9 351 IPR017103 -
Viun3g02366 900 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 832 IPR015683 -
Viun3g02366 900 Pfam Bacterial extracellular solute-binding proteins, family 3 473 785 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02366 Viun-Chr3 21410020 21413524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02366 15 841 Ion Channels AT2G29120 33.256 3.73e-143 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02366 - - gmx:100780320 1434.08