Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02339 ATGAAACATTCATCAGCAGGTTTTAGTTCTCCACCTCAAGAAGGAGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCACTTGTTTCTTTACCAGCTGTTGGAAGCCGCGTAGTATATTTTCCACAAGGTCACAGTGAACAGGTTGCTGTGTCTACCAACAGGGAGGTGGATGGCCATATTCCCAATTATCCAAGCTTACCGCCACAGCTTATTTGTCAACTTCATAACGTAACTATGCATGCAGATACCGAGACTGATGAAGTATATGCTCAGATGACTTTGCAACCTCTGAGTCCTCAAGAGCAGAAAGAGGCATACCTTCCAGCAGAGTTGGGCACTCCAAGTAAACAGCCAACAAACTACTTTTGCAAAATTTTGACTGCCAGTGACACCAGCACTCATGGTGGATTTTCTGTTCCTCGTAGGGCAGCTGAAAAAGTTTTTCCTCCTTTGGACTTTTCACAACAGCCTCCCGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATTTTCCGAGGTCAGCCTAAAAGGCATCTGCTTACAACCGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTTCTTTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGGCGTGCTAATCGTCCTCAACCTGTGATGCCTTCATCAGTCTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACTAATAGTCGTTTCACCATCTTTTATAACCCACGAGCTAGCCCATCAGAATTTGTCATACCTTTAGCAAAGTATGTTAAAGCCGTATATCATACTCGGGTTTCTGTCGGTATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCCAGTGTTCGGCGATACATGGGTACAATAACTGGCATTAGTGACCTGGACTCTGTTCGATGGCCAAATTCCCATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAGAGGCAACCACGGGTGTCTTTGTGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTCAAGAGACCATGGCCTCCAGGAATGCCTTCATTCCATGGTTTGAAGGATGATGATTTTGGTTTAAATTCTTCACTAATGTGGCTTCGAGACACAGACAGAGGTCTTCCATCTCTTAATTTTCCGGGGATTGGTGTTAGTCCTTGGATGCAGCCAAGGCTTGATCCCTCAATGGTGAATTATCAAACAGACGTATACCAAGCTATGGCCGCCGCTGCACTTCAGGATATGTGGACTTCAGATCCTTCCAAACAACATCCTACTTCCTTACTTCAATTTCAGCAACCACAGAACTTCCTGAATAGGACTTCTCCCTCAGTGCAGACTCAGATCTTGCAGCAGTCTCAGTCTCAGCAATCGTTTCCAAATAGTCAAGAAATACCACATCCATCTCAATCTCAGGCTCAAAGTATAACACATTTTCAGCAGCATTTGCAGCATCAGCATTCATTCAATAATCAGAATCAGCATCATCTTCTACAGCAGCAACAACAACAGCAACAATCACAACAACCACAGCAGCAACAATCACAACAACCACAACAGCAACAACAGCAGCTGCAGCAGCAACAAGTGGTTGATCATCAGCAGATTTCAAGTGCTGTCTCTTCAATGTCTCAGTTTGTTTCAGCACCTCAATCCCAATCGCCGCCCATGCAAGCTATCTCTTCACTGGGACATCAGCAGAGTTTTTCTGATTCAAACGGGAACCCTGTGACTAATGCTATTGTTTCTCCCCTGCATAGTATTTTGGGTTCATTTCCCCAGGATGAAACATCTCACCTTCTCAATCTTCCTAGAACATCATGGGTTCCTGTTCAACCTTCAACTGCATGGCCACCCTCCAAACGTGTTGCAGTGGATCCTCTCCTTCATTCTGGGGCATCTCAATGTGTTCTGCCTCAAGTGGAACAGTTGGGGCAACCACAGAGTACCATGGCTCAAAATGCAATTACATTGCCACCCTTTCCTAGTAGGGAGTGTGCTATAGAAGGAAGCACTGATCCGCAAAATCATCTTTTGTTTGGAGTTAATATAGAGCCCTCATCACTGCTAATGCATAATGGGTTGTCAAGCCTCAAGGGAGTTAGCAGCAACTGTGGCCCACCAACTATACCTTTCCAATCATCTAATTACCTGAACACCCCAAGCACTGATTCTTCAATGAATCCTGGAATGACACACAATATTGGTGATTCGGGCTTCCTGCAAACCTCAGAAAATGGAGGGCAAGGAAACCCACCGATCAAAACCTTTGTGAAGGTTTACAAATCGGGGTCCTTCGGAAGATCATTAGATATTACGAAATTCACCAGCTACCATGAGCTACGCGGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTCGACCAAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCATGGCCGGAATTTGTAAATAGTGTAGGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGCAACAATGGTCTAGAGCTTCTTAACTCAGTACCAATCCAGAGGCTCTCTAGTGGCATGTGTGATGACTATGCAGGCCATGAGGACCCAAGAAGTATTAGCACTGGGATAACAACTGTGGGTTCTTTAAACTATTAA 2769 0.4529 MKHSSAGFSSPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDGHIPNYPSLPPQLICQLHNVTMHADTETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGMPSFHGLKDDDFGLNSSLMWLRDTDRGLPSLNFPGIGVSPWMQPRLDPSMVNYQTDVYQAMAAAALQDMWTSDPSKQHPTSLLQFQQPQNFLNRTSPSVQTQILQQSQSQQSFPNSQEIPHPSQSQAQSITHFQQHLQHQHSFNNQNQHHLLQQQQQQQQSQQPQQQQSQQPQQQQQQLQQQQVVDHQQISSAVSSMSQFVSAPQSQSPPMQAISSLGHQQSFSDSNGNPVTNAIVSPLHSILGSFPQDETSHLLNLPRTSWVPVQPSTAWPPSKRVAVDPLLHSGASQCVLPQVEQLGQPQSTMAQNAITLPPFPSRECAIEGSTDPQNHLLFGVNIEPSSLLMHNGLSSLKGVSSNCGPPTIPFQSSNYLNTPSTDSSMNPGMTHNIGDSGFLQTSENGGQGNPPIKTFVKVYKSGSFGRSLDITKFTSYHELRGELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPQEVQQMGNNGLELLNSVPIQRLSSGMCDDYAGHEDPRSISTGITTVGSLNY 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02339 922 MobiDBLite consensus disorder prediction 476 562 - -
Viun3g02339 922 Gene3D - 125 228 IPR015300 -
Viun3g02339 922 SMART B3_2 127 229 IPR003340 GO:0003677
Viun3g02339 922 MobiDBLite consensus disorder prediction 575 606 - -
Viun3g02339 922 FunFam Auxin response factor 785 878 - -
Viun3g02339 922 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Viun3g02339 922 FunFam Auxin response factor 291 363 - -
Viun3g02339 922 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Viun3g02339 922 SUPERFAMILY CAD & PB1 domains 788 865 - -
Viun3g02339 922 Pfam AUX/IAA family 786 874 IPR033389 -
Viun3g02339 922 ProSiteProfiles PB1 domain profile. 789 873 IPR000270 GO:0005515
Viun3g02339 922 FunFam Auxin response factor 125 229 - -
Viun3g02339 922 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun3g02339 922 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Viun3g02339 922 Gene3D - 291 363 - -
Viun3g02339 922 CDD B3_DNA 126 227 IPR003340 GO:0003677
Viun3g02339 922 Gene3D - 786 878 - -
Viun3g02339 922 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 878 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02339 Viun-Chr3 20944442 20953577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02339 1 483 B3 DNA Binding Superfamily AT1G30330 84.631 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun3g02339 AUX_IAA 3e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02339 - - gmx:100777789 1593.56