Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02338 ATGAAACATTCATCAGCAGGTTTTAGTTCTCCACCTCAAGAAGGAGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCACTTGTTTCTTTACCAGCTGTTGGAAGCCGCGTAGTATATTTTCCACAAGGTCACAGTGAACAGGTTGCTGTGTCTACCAACAGGGAGGTGGATGGCCATATTCCCAATTATCCAAGCTTACCGCCACAGCTTATTTGTCAACTTCATAACGTAACTATGCATGCAGATACCGAGACTGATGAAGTATATGCTCAGATGACTTTGCAACCTCTGAGTCCTCAAGAGCAGAAAGAGGCATACCTTCCAGCAGAGTTGGGCACTCCAAGTAAACAGCCAACAAACTACTTTTGCAAAATTTTGACTGCCAGTGACACCAGCACTCATGGTGGATTTTCTGTTCCTCGTAGGGCAGCTGAAAAAGTTTTTCCTCCTTTGGACTTTTCACAACAGCCTCCCGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATTTTCCGAGGTCAGCCTAAAAGGCATCTGCTTACAACCGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTTCTTTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGGCGTGCTAATCGTCCTCAACCTGTGATGCCTTCATCAGTCTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACTAATAGTCGTTTCACCATCTTTTATAACCCACGAGCTAGCCCATCAGAATTTGTCATACCTTTAGCAAAGTATGTTAAAGCCGTATATCATACTCGGGTTTCTGTCGGTATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCCAGTGTTCGGCGATACATGGGTACAATAACTGGCATTAGTGACCTGGACTCTGTTCGATGGCCAAATTCCCATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAGAGGCAACCACGGGTGTCTTTGTGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTCAAGAGACCATGGCCTCCAGGAATGCCTTCATTCCATGCAGGTTTGAAGGATGATGATTTTGGTTTAAATTCTTCACTAATGTGGCTTCGAGACACAGACAGAGGTCTTCCATCTCTTAATTTTCCGGGGATTGGTGTTAGTCCTTGGATGCAGCCAAGGCTTGATCCCTCAATGGTGAATTATCAAACAGACGTATACCAAGCTATGGCCGCCGCTGCACTTCAGGATATGTGGACTTCAGATCCTTCCAAACAACATCCTACTTCCTTACTTCAATTTCAGCAACCACAGAACTTCCTGAATAGGACTTCTCCCTCAGTGCAGACTCAGATCTTGCAGCAGTCTCAGTCTCAGCAATCGTTTCCAAATAGTCAAGAAATACCACATCCATCTCAATCTCAGGCTCAAAGTATAACACATTTTCAGCAGCATTTGCAGCATCAGCATTCATTCAATAATCAGAATCAGCATCATCTTCTACAGCAGCAACAACAACAGCAACAATCACAACAACCACAGCAGCAACAATCACAACAACCACAACAGCAACAACAGCAGCTGCAGCAGCAACAAGTGGTTGATCATCAGCAGATTTCAAGTGCTGTCTCTTCAATGTCTCAGTTTGTTTCAGCACCTCAATCCCAATCGCCGCCCATGCAAGCTATCTCTTCACTGGGACATCAGCAGAGTTTTTCTGATTCAAACGGGAACCCTGTGACTAATGCTATTGTTTCTCCCCTGCATAGTATTTTGGGTTCATTTCCCCAGGATGAAACATCTCACCTTCTCAATCTTCCTAGAACATCATGGGTTCCTGTTCAACCTTCAACTGCATGGCCACCCTCCAAACGTGTTGCAGTGGATCCTCTCCTTCATTCTGGGGCATCTCAATGTGTTCTGCCTCAAGTGGAACAGTTGGGGCAACCACAGAGTACCATGGCTCAAAATGCAATTACATTGCCACCCTTTCCTAGTAGGGAGTGTGCTATAGAAGGAAGCACTGATCCGCAAAATCATCTTTTGTTTGGAGTTAATATAGAGCCCTCATCACTGCTAATGCATAATGGGTTGTCAAGCCTCAAGGGAGTTAGCAGCAACTGTGGCCCACCAACTATACCTTTCCAATCATCTAATTACCTGAACACCCCAAGCACTGATTCTTCAATGAATCCTGGAATGACACACAATATTGGTGATTCGGGCTTCCTGCAAACCTCAGAAAATGGAGGGCAAGGAAACCCACCGATCAAAACCTTTGTGAAGGTTTACAAATCGGGGTCCTTCGGAAGATCATTAGATATTACGAAATTCACCAGCTACCATGAGCTACGCGGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTCGACCAAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCATGGCCGGAATTTGTAAATAGTGTAGGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGCAACAATGGTCTAGAGCTTCTTAACTCAGTACCAATCCAGAGGCTCTCTAGTGGCATGTGTGATGACTATGCAGGCCATGAGGACCCAAGAAGTATTAGCACTGGGATAACAACTGTGGGTTCTTTAAACTATTAA 2772 0.4531 MKHSSAGFSSPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDGHIPNYPSLPPQLICQLHNVTMHADTETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGMPSFHAGLKDDDFGLNSSLMWLRDTDRGLPSLNFPGIGVSPWMQPRLDPSMVNYQTDVYQAMAAAALQDMWTSDPSKQHPTSLLQFQQPQNFLNRTSPSVQTQILQQSQSQQSFPNSQEIPHPSQSQAQSITHFQQHLQHQHSFNNQNQHHLLQQQQQQQQSQQPQQQQSQQPQQQQQQLQQQQVVDHQQISSAVSSMSQFVSAPQSQSPPMQAISSLGHQQSFSDSNGNPVTNAIVSPLHSILGSFPQDETSHLLNLPRTSWVPVQPSTAWPPSKRVAVDPLLHSGASQCVLPQVEQLGQPQSTMAQNAITLPPFPSRECAIEGSTDPQNHLLFGVNIEPSSLLMHNGLSSLKGVSSNCGPPTIPFQSSNYLNTPSTDSSMNPGMTHNIGDSGFLQTSENGGQGNPPIKTFVKVYKSGSFGRSLDITKFTSYHELRGELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPQEVQQMGNNGLELLNSVPIQRLSSGMCDDYAGHEDPRSISTGITTVGSLNY 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02338 923 MobiDBLite consensus disorder prediction 576 607 - -
Viun3g02338 923 SUPERFAMILY CAD & PB1 domains 789 866 - -
Viun3g02338 923 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Viun3g02338 923 SMART B3_2 127 229 IPR003340 GO:0003677
Viun3g02338 923 Pfam AUX/IAA family 787 875 IPR033389 -
Viun3g02338 923 FunFam Auxin response factor 291 363 - -
Viun3g02338 923 Gene3D - 125 228 IPR015300 -
Viun3g02338 923 MobiDBLite consensus disorder prediction 477 563 - -
Viun3g02338 923 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 879 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun3g02338 923 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Viun3g02338 923 FunFam Auxin response factor 125 229 - -
Viun3g02338 923 Gene3D - 291 363 - -
Viun3g02338 923 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun3g02338 923 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Viun3g02338 923 Gene3D - 787 879 - -
Viun3g02338 923 CDD B3_DNA 126 227 IPR003340 GO:0003677
Viun3g02338 923 ProSiteProfiles PB1 domain profile. 790 874 IPR000270 GO:0005515
Viun3g02338 923 FunFam Auxin response factor 786 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02338 Viun-Chr3 20944442 20953578 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02338 1 484 B3 DNA Binding Superfamily AT1G30330 84.458 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun3g02338 AUX_IAA 3e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02338 - - gmx:100777789 1588.93