Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02293 ATGGAGTCGGATTCAGACTCCGACGGATCTCACATCTCCGCAACTCCTCCGAGAAATTTAAGTCCGTCACCACCGCGGCCGCCACCACCACCTCTCGTGGTGTCAAATAAATCCCGAATCAGAATCAAACCCTCAAAATCAAAACCAGGTCCTTCTGGATCCTCCAAAGCCCCGTCGAAACCCGACCCGGTCCTGGAAACCCCTCTCTCTCTTCCCACCGATCTCCCCTTCCAAATTCGGCGACCTTCCGACGCGCCTTCAGTTTCTTCCTCCATCGAAACCCTCCCTGCTGGTTTCTTCTCTTCCTCCCACTCTGCTTCGTTCGCGAAGATTCGAAGACCGCTCATTAACCCAGAACCTTCTGTAATCGAACCGGTTCTTACTCCCACCGCGTCCAATTCACGCGCTAATAGTACCGATTCGAGGACACGCGGAAAGACGCGGCTTCCGAACCTGATAGGTGCCAGCGCGCCTATGCCTACTGTTAAGCCTCGACCATGCAGCGGCGGCGATGGGAACTTCGTGAGGCTAAACTTGAGTGGCAAGCGAAGGAAGTTCCTGAACAAGAAGGGAAAAAGCGGCGGGAAAAGATACAAGAGAGGGAAATTCAAATCGCAGCACGAAAGGGAGGGGGAAGAGAAGGATATTGGAGAGTTGAAGCAGAGAGGGGGTTGCAAGATTCGTGAGATTGATTGCGCTGTAGTGGAAGAGGCTGCGGCTGCGGCGCTTGATGAGCCTTCGGAGGAGAATTTGGTGAAGATTTTGAAATTAGTTTATGGCTATGATTGTTTCCGAGACGGGCAGGTTGAGGCAATTAAGATGGTTCTTGCTGGAAAGTCAGGAGCGGTTGTTTTGCCGACCGGCGCCGGGAAGTCGCTGTGTTATCAGTTGCCTGCTCTGATCTTGCCTGGGATTACATTGGTCGTTAGTCCATTGGTGGCTTTGATGACTGATCAGCTGAGGCAATTGCCTTATGTGATTAGGGGTGGTCTTCTATCTAGTACTCAGACACCTGAAGAAGCCTCTGAATCACTGATGCAGCTTCGACAAGGGGGGATAAAGGTGCTTTTTGTTTCACCGGAGCGGTTTCTGAATGAAGGGTTTCTGTCTATCATTTCTTCTTTGCCAGCCATCTCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCGTCTTTTATGCGACTTAGAGCATCTTTGCTTCGTAAGACACTTAATGTTCGTGCTGTGCTTGCAATGACAGCAACTGCTACTACCACAACTTTAGATGCCATCATGTCGGCTCTAGATATCCCTCAGTCAAATCTTATTCAGAAGGCGCAGTTTCGGGATAATTTTCATTTATCAGTGTCTATGGTCAGAAACAGAATGAAAGATCTACTGATTTTGATAAAGTCTCCTCCTTTTGCGGAAGTTCAGAGCATCATTATATACTGCAAATTTCAGTACGAAACTGATCAAGTTAGCAGATATTTGAATGATCACAGTATCTTGGCAAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGTAGCTATGTACAGGACTTGTTTAATTCCAACAAGATCAGAGTGGTTGTGGCCACTGTGGCATTTGGCATGGGGCTAGATAAAAGTGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCCGGAAGGGATGGGAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGACATTTTTCAAACTTCGTAGTCTTATGTACAGTGAAGGAGTAGACGAATATGCTGTGAACAAATTTCTGCGTGAAGTCTTTCCTGCTGATAAAAACTCCTGTGGGAAAATAATGTCATTAATCAAAGAATCTGCTTCACGCAGGCTCGATATGAAGGAAGAGGTGATGCTTACTCTTCTGACACGCTTGGAGTTGGGCAATGTGCAGTACTTGCAGTTACTTCCACAGATAAATACAACTTGCACTTTGGCTTTCCATAAGACTACTCCGCCATTACTTGCCCAAAAAGTATCTGCTATAGCTGTAATTCTAAAAAGATCTGAAAATAAGCGTGGGCAATATACTTTTGACATCCCTACTGTGGCAAATGACATGGGGGTTACAGCAGTTGAATTAACAAATCAGTTGTACGACCTGAAGTTGATGGGAGAAATAACTTATGAAATGAAGGACATGGCCTACTGTTATAGGATCATTGAAGTCCCTACAGACTTGTTATCACTATCAGAAGATATTACCCAATGGTTATCAGAAGTTGAAAATTGTAAGGTACAAAAAATGGATGCAATGTTTAGTGCTGTATATTATGCATTAAATCTATGTGATAAGATGCAAGGTTGCAATGGGACCAATCACACACCATGCTTGCAAAGGAAAATATTGGAATATTTTTCTGGAGTTGATAATACTGGTTTCTGCAAGAAAACTGAGGGCCAAAGCAGTCCTTTCCTACGAGCGGATATAAAGGTCTTTTTACAGAGCAATTCGCAGGCCCAATTTACGCCAAGAGCTGTTGCGAGAATAATGCATGGAATTGCAAGCCCGGCGTATCCTTCAACAACATGGAGTAAAACTCATTTCTGGGGAAGGTATACTCGAATAGACTTTAAGGTAGTGATGGAAGCAGCAAAGGAAGAACTTAAACATTTCGTCGGAAAAAATACGCTCTAA 2709 0.4478 MESDSDSDGSHISATPPRNLSPSPPRPPPPPLVVSNKSRIRIKPSKSKPGPSGSSKAPSKPDPVLETPLSLPTDLPFQIRRPSDAPSVSSSIETLPAGFFSSSHSASFAKIRRPLINPEPSVIEPVLTPTASNSRANSTDSRTRGKTRLPNLIGASAPMPTVKPRPCSGGDGNFVRLNLSGKRRKFLNKKGKSGGKRYKRGKFKSQHEREGEEKDIGELKQRGGCKIREIDCAVVEEAAAAALDEPSEENLVKILKLVYGYDCFRDGQVEAIKMVLAGKSGAVVLPTGAGKSLCYQLPALILPGITLVVSPLVALMTDQLRQLPYVIRGGLLSSTQTPEEASESLMQLRQGGIKVLFVSPERFLNEGFLSIISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLRKTLNVRAVLAMTATATTTTLDAIMSALDIPQSNLIQKAQFRDNFHLSVSMVRNRMKDLLILIKSPPFAEVQSIIIYCKFQYETDQVSRYLNDHSILAKSYHSGITAKERSYVQDLFNSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETFFKLRSLMYSEGVDEYAVNKFLREVFPADKNSCGKIMSLIKESASRRLDMKEEVMLTLLTRLELGNVQYLQLLPQINTTCTLAFHKTTPPLLAQKVSAIAVILKRSENKRGQYTFDIPTVANDMGVTAVELTNQLYDLKLMGEITYEMKDMAYCYRIIEVPTDLLSLSEDITQWLSEVENCKVQKMDAMFSAVYYALNLCDKMQGCNGTNHTPCLQRKILEYFSGVDNTGFCKKTEGQSSPFLRADIKVFLQSNSQAQFTPRAVARIMHGIASPAYPSTTWSKTHFWGRYTRIDFKVVMEAAKEELKHFVGKNTL 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02293 902 FunFam ATP-dependent DNA helicase Q4 232 442 - -
Viun3g02293 902 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 613 IPR001650 -
Viun3g02293 902 FunFam ATP-dependent DNA helicase Q-like 5 450 641 - -
Viun3g02293 902 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 379 388 IPR002464 -
Viun3g02293 902 MobiDBLite consensus disorder prediction 188 203 - -
Viun3g02293 902 Pfam Helicase conserved C-terminal domain 480 573 IPR001650 -
Viun3g02293 902 MobiDBLite consensus disorder prediction 188 216 - -
Viun3g02293 902 SMART helicmild6 493 574 IPR001650 -
Viun3g02293 902 MobiDBLite consensus disorder prediction 18 34 - -
Viun3g02293 902 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 272 442 IPR014001 -
Viun3g02293 902 CDD SF2_C_RecQ 450 583 - -
Viun3g02293 902 Gene3D - 450 640 IPR027417 -
Viun3g02293 902 NCBIfam RecQ family ATP-dependent DNA helicase 253 602 IPR004589 GO:0004386|GO:0006310
Viun3g02293 902 MobiDBLite consensus disorder prediction 1 90 - -
Viun3g02293 902 MobiDBLite consensus disorder prediction 126 146 - -
Viun3g02293 902 MobiDBLite consensus disorder prediction 122 174 - -
Viun3g02293 902 Gene3D - 234 442 IPR027417 -
Viun3g02293 902 SMART ultradead3 260 449 IPR014001 -
Viun3g02293 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 592 IPR027417 -
Viun3g02293 902 CDD DEXHc_RecQ4-like 252 445 - -
Viun3g02293 902 Pfam DEAD/DEAH box helicase 266 428 IPR011545 GO:0003676|GO:0005524
Viun3g02293 902 PANTHER DNA HELICASE RECQ FAMILY MEMBER 241 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02293 Viun-Chr3 20300727 20310407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02293 483 606 Eukaryotic Initiation Factors Gene Family AT3G19760 31.746 7.39e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02293 K10730 - gmx:100811214 1424.45