Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02292 ATGGAGTCGGATTCAGACTCCGACGGATCTCACATCTCCGCAACTCCTCCGAGAAATTTAAGTCCGTCACCACCGCGGCCGCCACCACCGCGGCCGCCACCACCGCGGCCGCCACCACCACCTCTCGTGGTGTCAAATAAATCCCGAATCAGAATCAAACCCTCAAAATCAAAACCAGGTCCTTCTGGATCCTCCAAAGCCCCGTCGAAACCCGACCCGGTCCTGGAAACCCCTCTCTCTCTTCCCACCGATCTCCCCTTCCAAATTCGGCGACCTTCCGACGCGCCTTCAGTTTCTTCCTCCATCGAAACCCTCCCTGCTGGTTTCTTCTCTTCCTCCCACTCTGCTTCGTTCGCGAAGATTCGAAGACCGCTCATTAACCCAGAACCTTCTGTAATCGAACCGGTTCTTACTCCCACCGCGTCCAATTCACGCGCTAATAGTACCGATTCGAGGACACGCGGAAAGACGCGGCTTCCGAACCTGATAGGTGCCAGCGCGCCTATGCCTACTGTTAAGCCTCGACCATGCAGCGGCGGCGATGGGAACTTCGTGAGGCTAAACTTGAGTGGCAAGCGAAGGAAGTTCCTGAACAAGAAGGGAAAAAGCGGCGGGAAAAGATACAAGAGAGGGAAATTCAAATCGCAGCACGAAAGGGAGGGGGAAGAGAAGGATATTGGAGAGTTGAAGCAGAGAGGGGGTTGCAAGATTCGTGAGATTGATTGCGCTGTAGTGGAAGAGGCTGCGGCTGCGGCGCTTGATGAGCCTTCGGAGGAGAATTTGGTGAAGATTTTGAAATTAGTTTATGGCTATGATTGTTTCCGAGACGGGCAGGTTGAGGCAATTAAGATGGTTCTTGCTGGAAAGTCAGGAGCGGTTGTTTTGCCGACCGGCGCCGGGAAGTCGCTGTGTTATCAGTTGCCTGCTCTGATCTTGCCTGGGATTACATTGGTCGTTAGTCCATTGGTGGCTTTGATGACTGATCAGCTGAGGCAATTGCCTTATGTGATTAGGGGTGGTCTTCTATCTAGTACTCAGACACCTGAAGAAGCCTCTGAATCACTGATGCAGCTTCGACAAGGGGGGATAAAGGTGCTTTTTGTTTCACCGGAGCGGTTTCTGAATGAAGGGTTTCTGTCTATCATTTCTTCTTTGCCAGCCATCTCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCGTCTTTTATGCGACTTAGAGCATCTTTGCTTCGTAAGACACTTAATGTTCGTGCTGTGCTTGCAATGACAGCAACTGCTACTACCACAACTTTAGATGCCATCATGTCGGCTCTAGATATCCCTCAGTCAAATCTTATTCAGAAGGCGCAGTTTCGGGATAATTTTCATTTATCAGTGTCTATGGTCAGAAACAGAATGAAAGATCTACTGATTTTGATAAAGTCTCCTCCTTTTGCGGAAGTTCAGAGCATCATTATATACTGCAAATTTCAGTACGAAACTGATCAAGTTAGCAGATATTTGAATGATCACAGTATCTTGGCAAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGTAGCTATGTACAGGACTTGTTTAATTCCAACAAGATCAGAGTGGTTGTGGCCACTGTGGCATTTGGCATGGGGCTAGATAAAAGTGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCCGGAAGGGATGGGAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGACATTTTTCAAACTTCGTAGTCTTATGTACAGTGAAGGAGTAGACGAATATGCTGTGAACAAATTTCTGCGTGAAGTCTTTCCTGCTGATAAAAACTCCTGTGGGAAAATAATGTCATTAATCAAAGAATCTGCTTCACGCAGGCTCGATATGAAGGAAGAGGTGATGCTTACTCTTCTGACACGCTTGGAGTTGGGCAATGTGCAGTACTTGCAGTTACTTCCACAGATAAATACAACTTGCACTTTGGCTTTCCATAAGACTACTCCGCCATTACTTGCCCAAAAAGTATCTGCTATAGCTGTAATTCTAAAAAGATCTGAAAATAAGCGTGGGCAATATACTTTTGACATCCCTACTGTGGCAAATGACATGGGGGTTACAGCAGTTGAATTAACAAATCAGTTGTACGACCTGAAGTTGATGGGAGAAATAACTTATGAAATGAAGGACATGGCCTACTGTTATAGGATCATTGAAGTCCCTACAGACTTGTTATCACTATCAGAAGATATTACCCAATGGTTATCAGAAGTTGAAAATTGTAAGGTACAAAAAATGGATGCAATGTTTAGTGCTGTATATTATGCATTAAATCTATGTGATAAGATGCAAGGTTGCAATGGGACCAATCACACACCATGCTTGCAAAGGAAAATATTGGAATATTTTTCTGGAGTTGATAATACTGGTTTCTGCAAGAAAACTGAGGGCCAAAGCAGTCCTTTCCTACGAGCGGATATAAAGGTCTTTTTACAGAGCAATTCGCAGGCCCAATTTACGCCAAGAGCTGTTGCGAGAATAATGCATGGAATTGCAAGCCCGGCGTATCCTTCAACAACATGGAGTAAAACTCATTTCTGGGGAAGGTATACTCGAATAGACTTTAAGGTAGTGATGGAAGCAGCAAAGGAAGAACTTAAACATTTCGTCGGAAAAAATACGCTCTAA 2739 0.4524 MESDSDSDGSHISATPPRNLSPSPPRPPPPRPPPPRPPPPPLVVSNKSRIRIKPSKSKPGPSGSSKAPSKPDPVLETPLSLPTDLPFQIRRPSDAPSVSSSIETLPAGFFSSSHSASFAKIRRPLINPEPSVIEPVLTPTASNSRANSTDSRTRGKTRLPNLIGASAPMPTVKPRPCSGGDGNFVRLNLSGKRRKFLNKKGKSGGKRYKRGKFKSQHEREGEEKDIGELKQRGGCKIREIDCAVVEEAAAAALDEPSEENLVKILKLVYGYDCFRDGQVEAIKMVLAGKSGAVVLPTGAGKSLCYQLPALILPGITLVVSPLVALMTDQLRQLPYVIRGGLLSSTQTPEEASESLMQLRQGGIKVLFVSPERFLNEGFLSIISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLRKTLNVRAVLAMTATATTTTLDAIMSALDIPQSNLIQKAQFRDNFHLSVSMVRNRMKDLLILIKSPPFAEVQSIIIYCKFQYETDQVSRYLNDHSILAKSYHSGITAKERSYVQDLFNSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETFFKLRSLMYSEGVDEYAVNKFLREVFPADKNSCGKIMSLIKESASRRLDMKEEVMLTLLTRLELGNVQYLQLLPQINTTCTLAFHKTTPPLLAQKVSAIAVILKRSENKRGQYTFDIPTVANDMGVTAVELTNQLYDLKLMGEITYEMKDMAYCYRIIEVPTDLLSLSEDITQWLSEVENCKVQKMDAMFSAVYYALNLCDKMQGCNGTNHTPCLQRKILEYFSGVDNTGFCKKTEGQSSPFLRADIKVFLQSNSQAQFTPRAVARIMHGIASPAYPSTTWSKTHFWGRYTRIDFKVVMEAAKEELKHFVGKNTL 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02292 912 MobiDBLite consensus disorder prediction 1 101 - -
Viun3g02292 912 MobiDBLite consensus disorder prediction 136 156 - -
Viun3g02292 912 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 389 398 IPR002464 -
Viun3g02292 912 MobiDBLite consensus disorder prediction 132 184 - -
Viun3g02292 912 Pfam Helicase conserved C-terminal domain 490 583 IPR001650 -
Viun3g02292 912 Gene3D - 244 452 IPR027417 -
Viun3g02292 912 SMART helicmild6 503 584 IPR001650 -
Viun3g02292 912 FunFam ATP-dependent DNA helicase Q-like 5 460 651 - -
Viun3g02292 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 282 452 IPR014001 -
Viun3g02292 912 FunFam ATP-dependent DNA helicase Q4 242 452 - -
Viun3g02292 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 602 IPR027417 -
Viun3g02292 912 CDD DEXHc_RecQ4-like 262 455 - -
Viun3g02292 912 MobiDBLite consensus disorder prediction 18 44 - -
Viun3g02292 912 SMART ultradead3 270 459 IPR014001 -
Viun3g02292 912 NCBIfam RecQ family ATP-dependent DNA helicase 263 612 IPR004589 GO:0004386|GO:0006310
Viun3g02292 912 Pfam DEAD/DEAH box helicase 276 438 IPR011545 GO:0003676|GO:0005524
Viun3g02292 912 Gene3D - 460 650 IPR027417 -
Viun3g02292 912 MobiDBLite consensus disorder prediction 198 213 - -
Viun3g02292 912 PANTHER DNA HELICASE RECQ FAMILY MEMBER 251 779 - -
Viun3g02292 912 MobiDBLite consensus disorder prediction 198 226 - -
Viun3g02292 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 473 623 IPR001650 -
Viun3g02292 912 CDD SF2_C_RecQ 460 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02292 Viun-Chr3 20300727 20310408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02292 493 616 Eukaryotic Initiation Factors Gene Family AT3G19760 31.746 8.50e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02292 K10730 - gmx:100811214 1420.6