Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02275 ATGGATGTTGCTGAGGTTGAAGAAAATCTAGTTGCTGCAACTGATGCTAAGTTACATGGACAAATGTGCAAGACTCTTTCTGTAATATATTGCAAAGTATTGTCTGTATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGTAAAGAATGTTCTTCAGCACTGTTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCTGATTCCGTCCTCCTAAAATTTGAGAAGGCTAAATCTGCTCTTGAAGATAGTCTTAGACGAGTGGAAGAAATTGTTCCACTATCTATTGGGTGTCAGGTTCAGGAGATTGTGCATGAGTTTGTGACAATAGAATTTGCACTTGACCCATCAGAAAAGCAAGTTGGCAATGATTTGATTGCATTGCTCCAACAGGGAAGAAAGTTTAATGATTCTAGTGACAGCAATGAGCTTGAATGTTTCCACCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGCAGCTCTTGCCGAAAGAAGAGCTCTCAAGAAACTCCTAGAAAGGGCTCGGTCAGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTCCTGCATCTTATGAGGAAATACTCCAAATTATTTAGAAGTGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCAGGGATGTATTGAGGACAGTGTTCCTGGTAGTCATTGTCAAGCCTTTGACAGACAACTTTCAAAATTCAGTTGCTTTAATTTTAAACCAAATAGTGGTAGGAAATCAGGGCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCTATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAGAGTTTGCATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACCCAGCAGGAACTTTCACATCTTTGTTTAACTCCTAATTACTGTGTTAAGGGCCTTGTTACTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGACCTTAATTATTGGCAGTTATTATCAGAGTCTGAATCTACAAGTTCAAAAGCTGTAGATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTTGAAGCACTTCCTTTGGAAGAGAGTGGTATCTCAGAGGAATCTGTTGAAAAGGGAACTGAAAGTGTGTCTGCACAAGAGGAAGATACAGAGCAGTATTTTAGCTTTCTCAAAGTTTTGACTGAGGGGAATAATTGGAGTAAGCAATGTCAAGTGGTAGAACAGTTAAGGTTGCTGCTGAGGGATGATGAGGAAGCCCGGATTTTTATGGGGGCTAATGGGTTTGTCGAAGCACTTTTGCACTTCTTGCAATCAGCTGTGCATGAAGGTAGTTTGATGGCTGTGGAAAGTGGAACAATGGCTCTCTTCAACCTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGAGTGTTATCATTGTTGGAAGAGATGATTTCTAAAACTGGTTCTTATGGTTGTATTACCGCTCTTTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCAATGATTGGCATGAGTCAGGCTATCCAGTTCCTAATCCAGCTTCTCCAATCTGACTCTGATGTTCAATGCAAGCAAGATGCTCTCCATGCTCTCTATAATCTTTCTTCTATGGCCTCTAACATTCAACACCTCCTTTCATCTGGCATCATTAGTGGCCTACAGTTCCTTCTTGAAGGCGACACTGATTGCTTGTGGACAGAGAGATGCATAGCGGTTTTGATAAATTTAGCTGCTTCTGAAGTTGGAAGGGAGGAAATTGTATCAACTCCCGGACTCATTAGTGCACTGGCTTCAATACTGGACACTGATGAGCTCTTGGAACAGGAGCAAGCAGTCACTTGTCTCCTAATTTTGTGCAATAGAAGTGAGGAGTGTTGTGACATGGTCTTGCAAGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGGACCCCAAGAGGCAGAGAAAAAGCTCAGAAACTGTTGATGCTGTTCCGAGAGCAGCGGCGGGACCATTCACCAGTTAAGACACATCAGTGCCCACCTGAAACTGTTGATTTGTCTATGCCTCCAGCTGAAATGAAACCGCTATGCAAGTCAATTTCAAGACGAAAGTCTGGGAGAGCTTTTAGCTTTTTCTGGAAAAGCAAGAGCTATTCTGTCTACCAGTGCTGA 2292 0.4188 MDVAEVEENLVAATDAKLHGQMCKTLSVIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCSECSKLYLAITADSVLLKFEKAKSALEDSLRRVEEIVPLSIGCQVQEIVHEFVTIEFALDPSEKQVGNDLIALLQQGRKFNDSSDSNELECFHQAATRLGITSSRAALAERRALKKLLERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVQGCIEDSVPGSHCQAFDRQLSKFSCFNFKPNSGRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQELSHLCLTPNYCVKGLVTSWCEQNGVPIPEGPPESLDLNYWQLLSESESTSSKAVDSVSSCKLKGVEALPLEESGISEESVEKGTESVSAQEEDTEQYFSFLKVLTEGNNWSKQCQVVEQLRLLLRDDEEARIFMGANGFVEALLHFLQSAVHEGSLMAVESGTMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTGSYGCITALYLNLSCLEEAKPMIGMSQAIQFLIQLLQSDSDVQCKQDALHALYNLSSMASNIQHLLSSGIISGLQFLLEGDTDCLWTERCIAVLINLAASEVGREEIVSTPGLISALASILDTDELLEQEQAVTCLLILCNRSEECCDMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRRDHSPVKTHQCPPETVDLSMPPAEMKPLCKSISRRKSGRAFSFFWKSKSYSVYQC 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02275 763 Gene3D - 604 729 IPR011989 -
Viun3g02275 763 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 593 IPR000225 GO:0005515
Viun3g02275 763 SMART arm_5 539 580 IPR000225 GO:0005515
Viun3g02275 763 SMART arm_5 454 498 IPR000225 GO:0005515
Viun3g02275 763 SUPERFAMILY RING/U-box 279 355 - -
Viun3g02275 763 Coils Coil 175 195 - -
Viun3g02275 763 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Viun3g02275 763 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Viun3g02275 763 Coils Coil 87 107 - -
Viun3g02275 763 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Viun3g02275 763 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Viun3g02275 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Viun3g02275 763 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Viun3g02275 763 PANTHER U BOX DOMAIN-CONTAINING 21 708 - -
Viun3g02275 763 SUPERFAMILY ARM repeat 428 704 IPR016024 -
Viun3g02275 763 Gene3D - 424 603 IPR011989 -
Viun3g02275 763 CDD RING-Ubox_PUB 281 333 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02275 Viun-Chr3 20052670 20057491 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02275 1 762 U-box Gene Family AT1G24330 65.810 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02275 - - gmx:100794099 1316.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g02275 3 20052670 20057491 Viun3g02275 3 20052670 20057491 ECH
Viun1g03445 1 41420214 41425217 Viun3g02275 3 20052670 20057491 PCT