Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02264 ATGGTGAAGTACTCAAGGGAGCCAAACAATCCCACTAAGTCATGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTCAAGAACACTAGGGAAACTGCCTTCGCAATCAGGAAGTTGCCCCTGGTCAAGGCCAAAAGGTATTTGGAGGATGTTCTTGCCCACAAACAGGCCATTCCATTCAGGCGTTTCTGCCGTGGTGTTGGCAGGACAGCCCAAGCAAAGAATAGACACTCTAATGGCCAAGGAAGGTGGCCTGTCAAATCAGCAAAATTTATCCTTGATTTGCTTAAAAATGCCGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCACTCTACATTTCCCATATCCAAGTCAATCAAGCGCAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCCCCGTGCCACATAGAGTTGATATTGTCGGAAAAGGAAGAACCTGTTAGGAAGGAGCCCGAGACAAAGTTGGCGACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGTGCCTCTTCTTAG 546 0.4744 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETKLATSKKSQALRSGASS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02264 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Viun3g02264 181 FunFam 60S ribosomal protein L17 1 175 - -
Viun3g02264 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Viun3g02264 181 MobiDBLite consensus disorder prediction 153 181 - -
Viun3g02264 181 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Viun3g02264 181 MobiDBLite consensus disorder prediction 153 167 - -
Viun3g02264 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Viun3g02264 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Viun3g02264 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 174 IPR005721 GO:0003735|GO:0006412|GO:0015934
Viun3g02264 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Viun3g02264 181 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02264 Viun-Chr3 19743704 19746858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02264 1 181 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.740 2.98e-116 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02264 K02880 - gmx:100499784 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g02264 3 19743704 19746858 Viun3g02264 3 19743704 19746858 ECH
Viun1g03451 1 41455956 41458535 Viun3g02264 3 19743704 19746858 PCT