Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun3g02244 | ATGGAGGGGGTTTCTCTCAAGTGCGGTGACTGCGGTGCTCTGTTGAGAACGGTAGAAGAAGCTCAAGAACACGCCGAACTCACTTCCCATTCCAACTTCTCCGAATCCACCGAACCGGTTCTCAACCTCGTTTGCACGGCTTGCTCCAAACCCTGCAGATCCAAAACCGAGAGTGATTTGCACACTAAAAGAACAGGCCACGCCGAGTTTGTTGACAAGACTTCCGAGACCGTGAAACCGATTAGTTTGGAGGCACCGAAGGTGGATGCAATCGCTTCCTTGGAAAACCCTTCCAGCACCGCATCAACTGATCAAAATGAAGAAATGGTTGTTCCTGAAGTGGACAAAAATCTGCTTGAAGAACTCGAATCAATGGGGTTTCCAACGGCACGGGCTACACGGGCGCTTCATTACTCTGGTAATGCTGGTCTTGAGGCGGCTGTAAACTGGATAGTAGAGCATGAGAATGATCATGACATAGATCAGATGCCCTTGGTACCTGCCAACACCAAAATTGAGGCTCCTAAACCTTCTCTTACCCCTGAAGAACTGAAAGCCAAACAACAAGAACTAAGGGAGAGAGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAGAACAGAGAGAGAAAAAGAAAAGGAGAGAATTCGCATTGGCAAGGAGTTGCTGGAAGCAAAGAGGATAGAAGAAGAAAATGAGAGGAAACGGGTGTTGGCCTTGAGAAAAGCAGAGAAAGAGGAAGAGAAAAGGGCTAGGGAGAAAATCAAGCAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGGAGACTTGGATTGCCTCCAGACGAACCATCAGCAGCCAAATCTTCAGCTGCACCTGTTGTGGAGGAGAAAAAGAGTTTTGTGCCTGTTAGGCCTGCCACAAAAGCTGAGCAAATGAGAGAGTGCCTCCGTTCTCTCAAGCAGAACCACAAGGAGAATGACGCCAGAGTAAAGAAAGCATTCCAAACTCTTCTAACTTATGTAGGGAATGTTGCCAGAAATCCTGATGAGGAAAAATTCAGAAAGATACGTCTTAGTAACCAATCTTTTCAGGACAGAGTTGGTTCATTGAAAGGGGGCATTGAATTTCTAGAAATTTGCGGGTTTGAGAAGATAGATGGTGGCGAGTTCTTGTTTTTGCCTAGGGACAAAGTTGAGATGGCGATCCTGAACACAGCTGGATCTGAACTAGACTCTGCAATTAAGAATCCCTTTTTTGGAGTTCTTTAG | 1248 | 0.4623 | MEGVSLKCGDCGALLRTVEEAQEHAELTSHSNFSESTEPVLNLVCTACSKPCRSKTESDLHTKRTGHAEFVDKTSETVKPISLEAPKVDAIASLENPSSTASTDQNEEMVVPEVDKNLLEELESMGFPTARATRALHYSGNAGLEAAVNWIVEHENDHDIDQMPLVPANTKIEAPKPSLTPEELKAKQQELRERARKKKEEEEKRTEREKEKERIRIGKELLEAKRIEEENERKRVLALRKAEKEEEKRAREKIKQKLEEDKAERRRRLGLPPDEPSAAKSSAAPVVEEKKSFVPVRPATKAEQMRECLRSLKQNHKENDARVKKAFQTLLTYVGNVARNPDEEKFRKIRLSNQSFQDRVGSLKGGIEFLEICGFEKIDGGEFLFLPRDKVEMAILNTAGSELDSAIKNPFFGVL | 415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun3g02244 | 415 | CDD | UBA_PUB_plant | 113 | 161 | - | - | |
| Viun3g02244 | 415 | Pfam | UBA/TS-N domain | 119 | 151 | IPR015940 | - | |
| Viun3g02244 | 415 | SUPERFAMILY | UBA-like | 103 | 167 | IPR009060 | GO:0005515 | |
| Viun3g02244 | 415 | CDD | PUB_UBA_plant | 309 | 415 | - | - | |
| Viun3g02244 | 415 | Coils | Coil | 299 | 319 | - | - | |
| Viun3g02244 | 415 | Coils | Coil | 227 | 264 | - | - | |
| Viun3g02244 | 415 | SMART | PGNneu | 325 | 388 | - | - | |
| Viun3g02244 | 415 | SMART | uba_6 | 115 | 153 | IPR015940 | - | |
| Viun3g02244 | 415 | SUPERFAMILY | PUG domain-like | 296 | 411 | IPR036339 | - | |
| Viun3g02244 | 415 | MobiDBLite | consensus disorder prediction | 172 | 213 | - | - | |
| Viun3g02244 | 415 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 30 | IPR013087 | - | |
| Viun3g02244 | 415 | MobiDBLite | consensus disorder prediction | 241 | 297 | - | - | |
| Viun3g02244 | 415 | MobiDBLite | consensus disorder prediction | 178 | 213 | - | - | |
| Viun3g02244 | 415 | Gene3D | - | 307 | 405 | - | - | |
| Viun3g02244 | 415 | Coils | Coil | 184 | 216 | - | - | |
| Viun3g02244 | 415 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 113 | 154 | IPR015940 | - | |
| Viun3g02244 | 415 | MobiDBLite | consensus disorder prediction | 241 | 273 | - | - | |
| Viun3g02244 | 415 | Gene3D | - | 115 | 161 | - | - | |
| Viun3g02244 | 415 | PANTHER | F13M7.16 PROTEIN | 1 | 415 | - | - | |
| Viun3g02244 | 415 | Pfam | PUB domain | 322 | 392 | IPR018997 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun3g02244 | Viun-Chr3 | 19321070 | 19331333 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun3g02244 | 98 | 415 | C2H2 Transcription Factor Family | AT1G04850 | 76.803 | 3.96e-152 | 432 |