Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02239 ATGACATCTGGTTACGAATACGATATTAACGATCTGCATCAAGAAGCTCAAGCCAGATGGCTGAAGCCAGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTTCCAGCTCACCCAAGAGCCCCCGCAACAGCCAACCAGTGGATCTCTGTTTCTGTTTAACAAAAGAGTCCTGCGTTTCTTCCGGAAAGATGGTCATAACTGGCGCAAGAAAAGAGATGGAAGAGCTGTGGGAGAAGCACACGAACGGCTCAAGGTTGGAAATGTTGAAGCCTTAAATTGTTACTATGCACACGGAGAGCAGAACCCTAGTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGAATATGAGCATATTGTTCTTGTGCATTACAGAAACACAAGTGAGGGAAGACTCAGTTCTGGAGCTGGCGCACAATTGTCACCAAGTTCCTCTTCTGCATTTAGTCAGAGTCCTAGCCCTTATTCTAATCAGAATCCAGGGTCAACATCCATACTTGTTGATTCATATGAACCTAATCAGAGTTTCTCCAGTCCTGGAACTACAGAAGTTACGTCTGATATATTCATTCTGAACAATAAAATGGATCACATGGATGGAACCGATGCAGAATCAGGAACCTCATCTGAGCTTGAAGTTACTCAAGCTTTGCGCCGACTGGAGGTACAATTAAGTTTGAATGAGGACAGCTTTGAAGATATTGCTCCCTTCTGCAATAAGCATGAAATTGCCCACGATTCAAACCCTCTGGATAATCAAAGGGTGATCAGCAATAAAGAGCAATCTGCTGCTTTCTCTGGACCTGATGATCAAGGGCTATTTTATGATGAATATAATGGAAGACAAGGTGATGGTGGTGAATGCTATCATGAACTAATAGACCATGGTTACCCAGATGTAAATGAAGAGGCTTTATGGACAGGGGTGCTGGAATCATGCAAGTCCTCAACTGCTGTCAAGTTACCACCGCAAAATGTATACATGGCAGCTGAAAATGAAAATTCAGTATCTTTTTCGAGAAGGGTACAAGTACCAATTTCCAAACAGGAAAACAGTCACTGGCTCAACTTCAACAGTGATACTTCTCAAAGCTCCGTTTTCTCACCACCTCAAGGGGTTGATGAAGTCAAATTTCCTGCATATTCTTCTGTGGTGGAAACACGAGTAACTAATTCTGGCTACTATGAAACATTGTTTGACCAAAGCCAAATTATAGCACCTCTAGATGCAGATTCAAGCTTGACTATTGCACAAAAACAGAAATTTACCATTAAGACATTCTCCCCAGAATGGGGTTATGCCACTGAGACCACCAAGGTCATCATTGTTGGGTCTTTTCTCTGTCATCCATCAGATTCTACCTGGGCATGCATGCTTGGTAATGTTGAAGTTCCTGTTCAGATAATTCATGATGGTGTAATCTGTTTTGAAGCTCCTCCTCACCTTCCTGAAAAGGTTACACTGTGCATTACTACTGGAAACCGTGAGTCCTGCAGTGAAGTCAGAGAGTTTGAATATCGTGACAAGACCTATAGTTGCACCCAATGTACTCAATCAAAAACAGACGTCACTAAAAGTCCTGAAGAGCTGTTATTACTTGTTAGATTAGGACAGATGCTTCTTTCTACATCAACAATAAAGAATGACAACATAGAATCGGGAGTTCCTCTCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGAGACTCTTCTAGTTGGCAGCGGGACATCGACTGGTACTGTTGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTTCAACAGTGGCTTTCTTACAGATCTCAGGAAAGAAATGAAGAGACAGGCTGCCCTTTGTCCAAGAAAGAGCAAGGCATTATTCACATGGTTGCTGGATTGGGTTTTGAGTGGGCCTTGAACCCCATTCTTAGTTGTGGAGTTAATATAAATTTCCGTGACATCAATGGCTGGACTGCCCTTCATTGGGCTGCCCGTTTCGGAAGGGAAAAAATGGTTGCTTCACTTGTCGCTTCTGGAGCATCTGCTGGAGCTGTGACAGATCCAACTGCACAAGACCCAATCGGAAAAACTGCTGCATCTATTGCAGCCAGCAATGGGAACAAGGGACTAGCAGGGTATCTTTCAGAGGTAGCTGTAACAAGCCACCTATCATCGCTTACATTGGAAGAGTGTGAGTTATCTAAAAGTACTGCACAGCTTCAGGCAGATATGACTGTGACCAGTGTCTCCAAGGAAAATCTTGCTGCCAATGGGGATCAGGCGTCACTCAAAGACACCTTGGCTGCTGTCAGAAATGTAACTCAAGCAGCTGCCCGGATACAATCTGCTTTTCGGTCACATTCTTTTAGAAAACGGAGAGCAAAAGAAGCAGCTGCTGGTGTAGATGGTACGAGTATAGGTGGCATTGGTAGCATTCCAGAAATTTCTGCTTTGTCAAAACTTGCCTTTCGAAACTCACGCGAACATAATTCAGCTGCTTTATCAATTCAGAAGAAATATCGTGGTTGGAAAGGTCGCAGAGATTTCTTATCGTTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCCTGGACAAGGTTGTGCTACGATGGAGAAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGACGTCCATGAACATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTGGATGTAGAAATTGAAAAGGCCGTTTCACGGGTGCTGTCCATGGTCGACTCACCAGATGCTCGTGACCAATATCATCGCATGCTTGAGAAATATCGTCAAGCTAAGGCTGAACTTGCAGGTACGAGTGACGAAGCATCATCAACAACTCCTGTGGGGAATACCTTATTTATGGAGGATGACTTCTATCCATTTCCCTAG 2958 0.4348 MTSGYEYDINDLHQEAQARWLKPAEVMYILQNHEKFQLTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRAVGEAHERLKVGNVEALNCYYAHGEQNPSFQRRSYWMLDPEYEHIVLVHYRNTSEGRLSSGAGAQLSPSSSSAFSQSPSPYSNQNPGSTSILVDSYEPNQSFSSPGTTEVTSDIFILNNKMDHMDGTDAESGTSSELEVTQALRRLEVQLSLNEDSFEDIAPFCNKHEIAHDSNPLDNQRVISNKEQSAAFSGPDDQGLFYDEYNGRQGDGGECYHELIDHGYPDVNEEALWTGVLESCKSSTAVKLPPQNVYMAAENENSVSFSRRVQVPISKQENSHWLNFNSDTSQSSVFSPPQGVDEVKFPAYSSVVETRVTNSGYYETLFDQSQIIAPLDADSSLTIAQKQKFTIKTFSPEWGYATETTKVIIVGSFLCHPSDSTWACMLGNVEVPVQIIHDGVICFEAPPHLPEKVTLCITTGNRESCSEVREFEYRDKTYSCTQCTQSKTDVTKSPEELLLLVRLGQMLLSTSTIKNDNIESGVPLIKQKADDDSWSHIIETLLVGSGTSTGTVDWLLEELLKDKLQQWLSYRSQERNEETGCPLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLVASGASAGAVTDPTAQDPIGKTAASIAASNGNKGLAGYLSEVAVTSHLSSLTLEECELSKSTAQLQADMTVTSVSKENLAANGDQASLKDTLAAVRNVTQAAARIQSAFRSHSFRKRRAKEAAAGVDGTSIGGIGSIPEISALSKLAFRNSREHNSAALSIQKKYRGWKGRRDFLSLRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMDVHEHEDEDILKVFRKQKVDVEIEKAVSRVLSMVDSPDARDQYHRMLEKYRQAKAELAGTSDEASSTTPVGNTLFMEDDFYPFP 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02239 985 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 957 - -
Viun3g02239 985 Gene3D - 827 876 - -
Viun3g02239 985 Gene3D Immunoglobulins 419 513 IPR013783 -
Viun3g02239 985 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Viun3g02239 985 FunFam Calmodulin-binding transcription activator 2 827 875 - -
Viun3g02239 985 SUPERFAMILY Ankyrin repeat 624 716 IPR036770 -
Viun3g02239 985 MobiDBLite consensus disorder prediction 133 184 - -
Viun3g02239 985 SMART CG_1_2 12 130 IPR005559 GO:0003677
Viun3g02239 985 CDD IPT 425 510 - -
Viun3g02239 985 SMART iq_5 771 793 IPR000048 GO:0005515
Viun3g02239 985 SMART iq_5 827 849 IPR000048 GO:0005515
Viun3g02239 985 SMART iq_5 850 872 IPR000048 GO:0005515
Viun3g02239 985 Pfam IPT/TIG domain 425 508 IPR002909 -
Viun3g02239 985 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Viun3g02239 985 Pfam Ankyrin repeats (3 copies) 636 714 IPR002110 GO:0005515
Viun3g02239 985 ProSiteProfiles IQ motif profile. 828 857 IPR000048 GO:0005515
Viun3g02239 985 ProSiteProfiles Ankyrin repeat profile. 654 686 IPR002110 GO:0005515
Viun3g02239 985 Pfam IQ calmodulin-binding motif 830 848 IPR000048 GO:0005515
Viun3g02239 985 Pfam IQ calmodulin-binding motif 853 872 IPR000048 GO:0005515
Viun3g02239 985 ProSiteProfiles IQ motif profile. 773 801 IPR000048 GO:0005515
Viun3g02239 985 FunFam Calmodulin-binding transcription activator 4 isoform A 535 719 - -
Viun3g02239 985 ProSiteProfiles Ankyrin repeat region circular profile. 654 680 - -
Viun3g02239 985 ProSiteProfiles IQ motif profile. 851 876 IPR000048 GO:0005515
Viun3g02239 985 Coils Coil 944 964 - -
Viun3g02239 985 SMART ANK_2a 654 683 IPR002110 GO:0005515
Viun3g02239 985 SMART ANK_2a 693 722 IPR002110 GO:0005515
Viun3g02239 985 Gene3D - 549 719 IPR036770 -
Viun3g02239 985 SUPERFAMILY E set domains 425 509 IPR014756 -
Viun3g02239 985 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 819 874 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02239 Viun-Chr3 19179033 19196057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02239 3 980 CAMTA Transcription Factor Family AT1G67310 52.849 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Viun3g02239 CG-1 3.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02239 K21596 - gmx:100786880 1634.39