Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02236 ATGACATCTGGTTACGAATACGATATTAACGATCTGCATCAAGAAGCTCAAGCCAGATGGCTGAAGCCAGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTTCCAGCTCACCCAAGAGCCCCCGCAACAGCCAACCAGTGGATCTCTGTTTCTGTTTAACAAAAGAGTCCTGCGTTTCTTCCGGAAAGATGGTCATAACTGGCGCAAGAAAAGAGATGGAAGAGCTGTGGGAGAAGCACACGAACGGCTCAAGGTTGGAAATGTTGAAGCCTTAAATTGTTACTATGCACACGGAGAGCAGAACCCTAGTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGAATATGAGCATATTGTTCTTGTGCATTACAGAAACACAAGTGAGGGAAGACTCAGTTCTGGAGCTGGCGCACAATTGTCACCAAGTTCCTCTTCTGCATTTAGTCAGAGTCCTAGCCCTTATTCTAATCAGAATCCAGGGTCAACATCCATACTTGTTGATTCATATGAACCTAATCAGAGTTTCTCCAGTCCTGGAACTACAGAAGTTACGTCTGATATATTCATTCTGAACAATAAAATGGATCACATGGATGGAACCGATGCAGAATCAGGAACCTCATCTGAGCTTGAAGTTACTCAAGCTTTGCGCCGACTGGAGGTACAATTAAGTTTGAATGAGGACAGCTTTGAAGATATTGCTCCCTTCTGCAATAAGCATGAAATTGCCCACGATTCAAACCCTCTGGATAATCAAAGGGTGATCAGCAATAAAGAGCAATCTGCTGCTTTCTCTGGACCTGATGATCAAGGGCTATTTTATGATGAATATAATGGAAGACAAGGTGATGGTGGTGAATGCTATCATGAACTAATAGACCATGGTTACCCAGATGTAAATGAAGAGGCTTTATGGACAGGGGTGCTGGAATCATGCAAGTCCTCAACTGCTGTCAAGTTACCACCGCAAAATGTATACATGGCAGCTGAAAATCAGGAAAATTCAGTATCTTTTTCGAGAAGGGTACAAGTACCAATTTCCAAACAGGAAAACAGTCACTGGCTCAACTTCAACAGTGATACTTCTCAAAGCTCAGCCGTTTTCTCACCACCTCAAGGGGTTGATGAAGTCAAATTTCCTGCATATTCTTCTGTGGTGGAAACACGAGTAACTAATTCTGGCTACTATGAAACATTGTTTGACCAAAGCCAAATTATAGCACCTCTAGATGCAGATTCAAGCTTGACTATTGCACAAAAACAGAAATTTACCATTAAGACATTCTCCCCAGAATGGGGTTATGCCACTGAGACCACCAAGGTCATCATTGTTGGGTCTTTTCTCTGTCATCCATCAGATTCTACCTGGGCATGCATGCTTGGTAATGTTGAAGTTCCTGTTCAGATAATTCATGATGGTGTAATCTGTTTTGAAGCTCCTCCTCACCTTCCTGAAAAGGTTACACTGTGCATTACTACTGGAAACCGTGAGTCCTGCAGTGAAGTCAGAGAGTTTGAATATCGTGACAAGACCTATAGTTGCACCCAATGTACTCAATCAAAAACAGACGTCACTAAAAGTCCTGAAGAGCTGTTATTACTTGTTAGATTAGGACAGATGCTTCTTTCTACATCAACAATAAAGAATGACAACATAGAATCGGGAGTTCCTCTCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGAGACTCTTCTAGTTGGCAGCGGGACATCGACTGGTACTGTTGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTTCAACAGTGGCTTTCTTACAGATCTCAGGAAAGAAATGAAGAGACAGGCTGCCCTTTGTCCAAGAAAGAGCAAGGCATTATTCACATGGTTGCTGGATTGGGTTTTGAGTGGGCCTTGAACCCCATTCTTAGTTGTGGAGTTAATATAAATTTCCGTGACATCAATGGCTGGACTGCCCTTCATTGGGCTGCCCGTTTCGGAAGGGAAAAAATGGTTGCTTCACTTGTCGCTTCTGGAGCATCTGCTGGAGCTGTGACAGATCCAACTGCACAAGACCCAATCGGAAAAACTGCTGCATCTATTGCAGCCAGCAATGGGAACAAGGGACTAGCAGGGTATCTTTCAGAGGTAGCTGTAACAAGCCACCTATCATCGCTTACATTGGAAGAGTGTGAGTTATCTAAAAGTACTGCACAGCTTCAGGCAGATATGACTGTGACCAGTGTCTCCAAGGAAAATCTTGCTGCCAATGGGGATCAGGCGTCACTCAAAGACACCTTGGCTGCTGTCAGAAATGTAACTCAAGCAGCTGCCCGGATACAATCTGCTTTTCGGTCACATTCTTTTAGAAAACGGAGAGCAAAAGAAGCAGCTGCTGGTGTAGATGGTACGAGTATAGGTGGCATTGGTAGCATTCCAGAAATTTCTGCTTTGTCAAAACTTGCCTTTCGAAACTCACGCGAACATAATTCAGCTGCTTTATCAATTCAGAAGAAATATCGTGGTTGGAAAGGTCGCAGAGATTTCTTATCGTTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCCTGGACAAGGTTGTGCTACGATGGAGAAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGACGTCCATGAACATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTGGATGTAGAAATTGAAAAGGCCGTTTCACGGGTGCTGTCCATGGTCGACTCACCAGATGCTCGTGACCAATATCATCGCATGCTTGAGAAATATCGTCAAGCTAAGGCTGAACTTGCAGGTACGAGTGACGAAGCATCATCAACAACTCCTGTGGGGAATACCTTATTTATGGAGGATGACTTCTATCCATTTCCCTAG 2964 0.4352 MTSGYEYDINDLHQEAQARWLKPAEVMYILQNHEKFQLTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRAVGEAHERLKVGNVEALNCYYAHGEQNPSFQRRSYWMLDPEYEHIVLVHYRNTSEGRLSSGAGAQLSPSSSSAFSQSPSPYSNQNPGSTSILVDSYEPNQSFSSPGTTEVTSDIFILNNKMDHMDGTDAESGTSSELEVTQALRRLEVQLSLNEDSFEDIAPFCNKHEIAHDSNPLDNQRVISNKEQSAAFSGPDDQGLFYDEYNGRQGDGGECYHELIDHGYPDVNEEALWTGVLESCKSSTAVKLPPQNVYMAAENQENSVSFSRRVQVPISKQENSHWLNFNSDTSQSSAVFSPPQGVDEVKFPAYSSVVETRVTNSGYYETLFDQSQIIAPLDADSSLTIAQKQKFTIKTFSPEWGYATETTKVIIVGSFLCHPSDSTWACMLGNVEVPVQIIHDGVICFEAPPHLPEKVTLCITTGNRESCSEVREFEYRDKTYSCTQCTQSKTDVTKSPEELLLLVRLGQMLLSTSTIKNDNIESGVPLIKQKADDDSWSHIIETLLVGSGTSTGTVDWLLEELLKDKLQQWLSYRSQERNEETGCPLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLVASGASAGAVTDPTAQDPIGKTAASIAASNGNKGLAGYLSEVAVTSHLSSLTLEECELSKSTAQLQADMTVTSVSKENLAANGDQASLKDTLAAVRNVTQAAARIQSAFRSHSFRKRRAKEAAAGVDGTSIGGIGSIPEISALSKLAFRNSREHNSAALSIQKKYRGWKGRRDFLSLRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMDVHEHEDEDILKVFRKQKVDVEIEKAVSRVLSMVDSPDARDQYHRMLEKYRQAKAELAGTSDEASSTTPVGNTLFMEDDFYPFP 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02236 987 ProSiteProfiles Ankyrin repeat region circular profile. 656 682 - -
Viun3g02236 987 ProSiteProfiles IQ motif profile. 853 878 IPR000048 GO:0005515
Viun3g02236 987 SMART ANK_2a 695 724 IPR002110 GO:0005515
Viun3g02236 987 SMART ANK_2a 656 685 IPR002110 GO:0005515
Viun3g02236 987 ProSiteProfiles IQ motif profile. 775 803 IPR000048 GO:0005515
Viun3g02236 987 MobiDBLite consensus disorder prediction 133 184 - -
Viun3g02236 987 SMART CG_1_2 12 130 IPR005559 GO:0003677
Viun3g02236 987 ProSiteProfiles IQ motif profile. 830 859 IPR000048 GO:0005515
Viun3g02236 987 FunFam Calmodulin-binding transcription activator 4 isoform A 537 721 - -
Viun3g02236 987 Pfam IPT/TIG domain 427 510 IPR002909 -
Viun3g02236 987 Gene3D - 829 878 - -
Viun3g02236 987 Pfam Ankyrin repeats (3 copies) 638 716 IPR002110 GO:0005515
Viun3g02236 987 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Viun3g02236 987 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 959 - -
Viun3g02236 987 ProSiteProfiles Ankyrin repeat profile. 656 688 IPR002110 GO:0005515
Viun3g02236 987 CDD IPT 427 512 - -
Viun3g02236 987 SUPERFAMILY Ankyrin repeat 626 718 IPR036770 -
Viun3g02236 987 Gene3D Immunoglobulins 421 515 IPR013783 -
Viun3g02236 987 FunFam Calmodulin-binding transcription activator 2 829 877 - -
Viun3g02236 987 Coils Coil 946 966 - -
Viun3g02236 987 SMART iq_5 852 874 IPR000048 GO:0005515
Viun3g02236 987 SMART iq_5 829 851 IPR000048 GO:0005515
Viun3g02236 987 SMART iq_5 773 795 IPR000048 GO:0005515
Viun3g02236 987 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Viun3g02236 987 Gene3D - 551 721 IPR036770 -
Viun3g02236 987 Pfam IQ calmodulin-binding motif 832 850 IPR000048 GO:0005515
Viun3g02236 987 Pfam IQ calmodulin-binding motif 855 874 IPR000048 GO:0005515
Viun3g02236 987 SUPERFAMILY E set domains 427 511 IPR014756 -
Viun3g02236 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 821 876 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02236 Viun-Chr3 19179033 19196057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02236 3 982 CAMTA Transcription Factor Family AT1G67310 53.079 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Viun3g02236 CG-1 3.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02236 K21596 - gmx:100786880 1633.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g02236 3 19179033 19196057 Viun3g02236 3 19179033 19196057 ECH
Viun1g03475 1 41572832 41582923 Viun3g02236 3 19179033 19196057 PCT