Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02229 ATGGGGAAGAAGAAGTTGGAGATAAAGCGAATCGAGAACAAAAGCTCTCGGCAGATAACATTCTCGAAGAGGCGCAATGGATTGATGAAGAAAGCTCGCGAGTTGTCCATTCTCTGCGATGCGAAGGTGGCGCTCTTCATCTTCTCCAGCACCGGGAAGCTTTTCGACCTCTGCAACGGTGACAGTTTGGACGAGGTCCTGCAACGATATTGGCATTACAAAGGAGTGAGTGGTGTTGACTCAAAGGAACGCCACATTAAAATTGCAGAGATTTTGTATGATGCAACGTTTTCTGAAATGGTGAAAAGGCGATATGGTGTTTCTGAACTTGAACATCTTTGTCTGACTAACCTTATGGAACTAGAGAAATTCATTCATACTGCTCTTTCACAAATCAGATCAGCAAAGATGCGATTGATGATGGAATCCGTAGATAATCTTAAGAAAAGGGAACATACACTGAGAAAAGAAAACGAGCATTTGCATAAACAGATTAAGGCAATGGAAAATGCTAACTGTGTAAGCAACATGGTGACACTGACTATAGACTGTGATAAAACAGATATGGAGGCAGCACAACTCTGGAGCCAACTTGCACTCAATCCATGA 609 0.4253 MGKKKLEIKRIENKSSRQITFSKRRNGLMKKARELSILCDAKVALFIFSSTGKLFDLCNGDSLDEVLQRYWHYKGVSGVDSKERHIKIAEILYDATFSEMVKRRYGVSELEHLCLTNLMELEKFIHTALSQIRSAKMRLMMESVDNLKKREHTLRKENEHLHKQIKAMENANCVSNMVTLTIDCDKTDMEAAQLWSQLALNP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02229 202 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Viun3g02229 202 Coils Coil 144 171 - -
Viun3g02229 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun3g02229 202 Pfam K-box region 102 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun3g02229 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun3g02229 202 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Viun3g02229 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun3g02229 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun3g02229 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun3g02229 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 152 - -
Viun3g02229 202 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Viun3g02229 202 ProSiteProfiles K-box domain profile. 81 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun3g02229 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02229 Viun-Chr3 18989772 19013484 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02229 1 182 MADS-box Gene Family AT5G10140 41.270 4.36e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun3g02229 K-box 6.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02229 - K09264 gmx:100804540 260.766