Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02225 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTTACCTTCGCTAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTGGAGTTAAGCAGTCAACAAGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTGCAACGGTCCCAGAGGAACCTTATGGGCGAAGATCTTGGTCCTCTTAGCAGCAAAGAGCTTGAATCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAACAAATAAGATCAACAAGGACGCAGTTCATGCTGGATCAGCTCTCTGATCTTCAGCGTAAGCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCTGGAGTTGAAGACATGGGATATGGCAGGCATCCATCTCAAGCTCAGGGTGACGCACTCTTTCAACCATTGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGTCCAAGCATGAGCAATTACATGGCAGGATGGTTACCATAG 687 0.4702 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKQLEGYQINPLQLNPGVEDMGYGRHPSQAQGDALFQPLECEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02225 228 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Viun3g02225 228 FunFam MADS-box transcription factor 7 13 98 - -
Viun3g02225 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun3g02225 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Viun3g02225 228 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Viun3g02225 228 ProSiteProfiles K-box domain profile. 89 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun3g02225 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun3g02225 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun3g02225 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun3g02225 228 Coils Coil 126 146 - -
Viun3g02225 228 Pfam K-box region 91 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun3g02225 228 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Viun3g02225 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun3g02225 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun3g02225 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02225 Viun-Chr3 18960117 18967562 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02225 1 228 MADS-box Gene Family AT1G24260 79.828 5.08e-124 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun3g02225 K-box 5.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02225 - - gmx:100805078 431.795