Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02222 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTTACCTTCGCTAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTGGTAATGGAGTTAAGCAGTCAACAAGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTGCAACGGTCCCAGAGGAACCTTATGGGCGAAGATCTTGGTCCTCTTAGCAGCAAAGAGCTTGAATCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAACAAATAAGATCAACAAGGACGCAGTTCATGCTGGATCAGCTCTCTGATCTTCAGCGTAAGCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCTGGAGTTGAAGACATGGGATATGGCAGGCATCCATCTCAAGCTCAGGGTGACGCACTCTTTCAACCATTGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGTCCAAGCATGAGCAATTACATGGCAGGATGGTTACCATAG 693 0.469 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALVMELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKQLEGYQINPLQLNPGVEDMGYGRHPSQAQGDALFQPLECEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02222 230 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Viun3g02222 230 ProSiteProfiles K-box domain profile. 91 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun3g02222 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun3g02222 230 Coils Coil 128 148 - -
Viun3g02222 230 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Viun3g02222 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Viun3g02222 230 FunFam MADS-box transcription factor 7 13 100 - -
Viun3g02222 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun3g02222 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun3g02222 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun3g02222 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun3g02222 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun3g02222 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun3g02222 230 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Viun3g02222 230 Pfam K-box region 93 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02222 Viun-Chr3 18960115 18967562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02222 1 230 MADS-box Gene Family AT1G24260 79.828 2.27e-126 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun3g02222 K-box 6.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02222 - - gmx:100778931 431.409