Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02200 ATGCCTGCCCTCATCGATCTCAACAGCGCCACCGAGGACCATGAAACGACATCGTCTCTCCCCTCCTCCGTCTGCCTCGAACTCTGGCACGCCTGCGCGGGTCCCATGATCTCCTTGCCCAAGAAAGGAACCCTTGTCGTCTACTTCCCTCAAGGACACTTGGAACAACACCTTCACGATTTTCCGCTTCCTGCTTCTGCTAACATCCCCTCCCATCTCTTCTGTCGCGTTCTCGATGTCAAGCTCCATGCTGAGGAAGGGAGTGATGAAGTGTATTGCCAGGTGGTGTTGGTTCCCAAAAGTGAGCAAGTGCATCAGAAGTTGCGGGAAGGGGAATTTGAAGCTGATGGTGAGGAGGAGGATGCTGAAACTGTGATGAAGTCCACCACACCTCACATGTTCTGCAAGACTTTGACAGCTTCTGATACTAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCTGCGGAAGATTGCTTTCCACCTCTGGAATACAGTCAACAGAGACCTTCGCAGGAGCTTGTGGCGAAGGATCTGCATGGTCAAGAATGGAGGTTTCGACATATTTATAGGGGGCAACCACGACGACACTTGCTTACCACTGGGTGGAGTGCATTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGTGAGGATGGAGAATTAAGATTGGGAATTCGTAGGGCTGCTCAATTAAAAAGTGGCAGTGCCATTTCAACTTTTGCTGCCGAGCAATTGAATCTTAGCAGTCTTCTGGATGTGGTTAATGCTTTATCAGCAAAACGTGCCTTTAGTGTTCACTATAATCCAAGGGTCAGCTCATCTGAGTTCATCATACCCGTTAAGAAATTCTTGAGGAGCCTTGATTATTCTTATTCAATTGGAACAAGATTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGATTTACAGGATTGATTGTTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTAATGGTAAGGTGGGATGACCTAGAAGCCTCAAGGCATAATAGGGTTTCACCTTGGGAGATTGAGCCATCTGGTTCTGCATCTACTGCAAATAACTTGATATCAGCTGGTTTGAAGAGGATCAAGATTGGATTGCCTTCAACAAAGCTAGATTTCCAAGTTTCCAATGCAATTGGATCATCAGACTTTGGCGAATCTCTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTGGGTGTTAATACTACTTTCGATAGTATTAGTGGTCAGAATCACCAGCTATCTGATTTGAGGAGATGCTATCCTGGCTCAAACTGTCCTAGGATTGCTGCAACTGGAAATAGCATTGGAATTCCACAAGTGAGTTCCAATGTTTCCTGCAATGGCATAGGCTTTAGTGAATCTTTCATATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGGGCCTTGTCTGTTGATGAGGCTTGTGGAAATGGTCGCTTTGGACCTTTTGATGGTAACCACACACCGAGACCCAGCAATGGATGGTCTTCCCACTTGAGTAACAAGTCTTCACATTTGCATCCACCTGTTCCATCTGGGCAAGTTTCATCTCCATCATCTGTGTTAGTGTTCCAGCAAGCAGTCAATCCAGTTTCAAACTCTGATTATAACAGCAAAATCAGTCAGGTGATGGAAGGTAAAGTCCATCAACAACTTTCATACACTTCTGAAGCTAAAGGTGGAAAATTTGTATCAGCCCCTTATGAGCCTCAGCCTCTTCGTGGACTAGTTCAGGAAGGCACAAGTTCTTTTGGTGTCTCAAACTTGCATAATCAGTTAGAAAGTTCTCGTTCACACGATTCTATTTCAGCACTTCGGGCTAGTAAAGAGTTGGTTCCCACTTGTAAAAGTCGATGCAGAGTCTTTGGCTTTTCACTAACTGAGGGCGCTCCTGTTGCAAGTACAGAAGTAGCTGCCGCCAACCCATCTGCAGTCACATGTTCTGGACCTTCCTTTGCAAGACACGGTGAAGATGGTTTCCACCCAACGCATCCGCATAGGAGCAAGGCAGTGGGAAGTTATTGCACCAAAAAGCATGAAAATGTTACCAAATTCCAATTCGCTGTAGCAAGATAA 2163 0.4572 MPALIDLNSATEDHETTSSLPSSVCLELWHACAGPMISLPKKGTLVVYFPQGHLEQHLHDFPLPASANIPSHLFCRVLDVKLHAEEGSDEVYCQVVLVPKSEQVHQKLREGEFEADGEEEDAETVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLEYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSAISTFAAEQLNLSSLLDVVNALSAKRAFSVHYNPRVSSSEFIIPVKKFLRSLDYSYSIGTRFRMRFETEDAAERRFTGLIVGITDVDPVRWPGSKWRCLMVRWDDLEASRHNRVSPWEIEPSGSASTANNLISAGLKRIKIGLPSTKLDFQVSNAIGSSDFGESLRFQKVLQGQEMLGVNTTFDSISGQNHQLSDLRRCYPGSNCPRIAATGNSIGIPQVSSNVSCNGIGFSESFIFQKVLQGQEILPSQPYGRALSVDEACGNGRFGPFDGNHTPRPSNGWSSHLSNKSSHLHPPVPSGQVSSPSSVLVFQQAVNPVSNSDYNSKISQVMEGKVHQQLSYTSEAKGGKFVSAPYEPQPLRGLVQEGTSSFGVSNLHNQLESSRSHDSISALRASKELVPTCKSRCRVFGFSLTEGAPVASTEVAAANPSAVTCSGPSFARHGEDGFHPTHPHRSKAVGSYCTKKHENVTKFQFAVAR 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02200 720 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 658 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun3g02200 720 MobiDBLite consensus disorder prediction 518 543 - -
Viun3g02200 720 MobiDBLite consensus disorder prediction 509 543 - -
Viun3g02200 720 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Viun3g02200 720 Pfam Auxin response factor 261 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun3g02200 720 SUPERFAMILY DNA-binding pseudobarrel domain 126 247 IPR015300 -
Viun3g02200 720 SMART B3_2 134 236 IPR003340 GO:0003677
Viun3g02200 720 Gene3D - 297 371 - -
Viun3g02200 720 Gene3D - 132 236 IPR015300 -
Viun3g02200 720 CDD B3_DNA 132 234 IPR003340 GO:0003677
Viun3g02200 720 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Viun3g02200 720 FunFam Auxin response factor 297 368 - -
Viun3g02200 720 FunFam Auxin response factor 132 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02200 Viun-Chr3 18540049 18548540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02200 22 488 B3 DNA Binding Superfamily AT5G60450 51.046 7.78e-144 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun3g02200 B3 9.4e-23 CL0405