Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02199 ATGCCTGCCCTCATCGATCTCAACAGCGCCACCGAGGACCATGAAACGACATCGTCTCTCCCCTCCTCCGTCTGCCTCGAACTCTGGCACGCCTGCGCGGGTCCCATGATCTCCTTGCCCAAGAAAGGAACCCTTGTCGTCTACTTCCCTCAAGGACACTTGGAACAACACCTTCACGATTTTCCGCTTCCTGCTTCTGCTAACATCCCCTCCCATCTCTTCTGTCGCGTTCTCGATGTCAAGCTCCATGCTGAGGAAGGGAGTGATGAAGTGTATTGCCAGGTGGTGTTGGTTCCCAAAAGTGAGCAAGTGCATCAGAAGTTGCGGGAAGGGGAATTTGAAGCTGATGGTGAGGAGGAGGATGCTGAAACTGTGATGAAGTCCACCACACCTCACATGTTCTGCAAGACTTTGACAGCTTCTGATACTAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCTGCGGAAGATTGCTTTCCACCTCTGGAATACAGTCAACAGAGACCTTCGCAGGAGCTTGTGGCGAAGGATCTGCATGGTCAAGAATGGAGGTTTCGACATATTTATAGGGGGCAACCACGACGACACTTGCTTACCACTGGGTGGAGTGCATTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGTGAGGATGGAGAATTAAGATTGGGAATTCGTAGGGCTGCTCAATTAAAAAGTGGCAGTGCCATTTCAACTTTTGCTGCCGAGCAATTGAATCTTAGCAGTCTTCTGGATGTGGTTAATGCTTTATCAGCAAAACGTGCCTTTAGTGTTCACTATAATCCAAGGGTCAGCTCATCTGAGTTCATCATACCCGTTAAGAAATTCTTGAGGAGCCTTGATTATTCTTATTCAATTGGAACAAGATTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGATTTACAGGATTGATTGTTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTAATGGTAAGGTGGGATGACCTAGAAGCCTCAAGGCATAATAGGGTTTCACCTTGGGAGATTGAGCCATCTGGTTCTGCATCTACTGCAAATAACTTGATATCAGCTGGTTTGAAGAGGATCAAGATTGGATTGCCTTCAACAAAGCTAGATTTCCAAGTTTCCAATGCAATTGGATCATCAGACTTTGGCGAATCTCTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTGGGTGTTAATACTACTTTCGATAGTATTAGTGGTCAGAATCACCAGCTATCTGATTTGAGGAGATGCTATCCTGGCTCAAACTGTCCTAGGATTGCTGCAACTGGAAATAGCATTGGAATTCCACAAGTGAGTTCCAATGTTTCCTGCAATGGCATAGGCTTTAGTGAATCTTTCATATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGGGCCTTGTCTGTTGATGAGGCTTGTGGAAATGGTCGCTTTGGACCTTTTGATGGTAACCACACACCGAGACCCAGCAATGGATGGTCTTCCCACTTGAGTAACAAGTCTTCACATTTGCATCCACCTGTTCCATCTGGGCAAGTTTCATCTCCATCATCTGTGTTAGTGTTCCAGCAAGCAGTCAATCCAGTTTCAAACTCTGATTATAACAGCAAAATCAGTCAGGTGATGGAAGGTAAAGTCCATCAACAACTTTCATACACTTCTGAAGCTAAAGGTGGAAAATTTGTATCAGCCCCTTATGAGCCTCAGCCTCTTCGTGGACTAGTTCAGGAAGGCACAAGTTCTTTTGGTGTCTCAAACTTGCATAATCAGTTAGAAAGTTCTCGTTCACACGATTCTATTTCAGCACTTCGGGCTAGTAAAGAGTTGGTTCCCACTTGTAAAAGTCGATGCAGAGTCTTTGGCTTTTCACTAACTGAGGGCGCTCCTGTTGCAAGTACAGAAGTAGCTGCCGCCAACCCATCTGCAGTCACATGTTCTGGACCTTCCTTTGCAAGACACGGTGAAGATGGTTTCCACCCAACGCATCCGCATAGGAGCAAGGCAGTGGGAAGTTATTGCACCAAAGGCGTGCTGCAATATTGA 2136 0.4602 MPALIDLNSATEDHETTSSLPSSVCLELWHACAGPMISLPKKGTLVVYFPQGHLEQHLHDFPLPASANIPSHLFCRVLDVKLHAEEGSDEVYCQVVLVPKSEQVHQKLREGEFEADGEEEDAETVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLEYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSAISTFAAEQLNLSSLLDVVNALSAKRAFSVHYNPRVSSSEFIIPVKKFLRSLDYSYSIGTRFRMRFETEDAAERRFTGLIVGITDVDPVRWPGSKWRCLMVRWDDLEASRHNRVSPWEIEPSGSASTANNLISAGLKRIKIGLPSTKLDFQVSNAIGSSDFGESLRFQKVLQGQEMLGVNTTFDSISGQNHQLSDLRRCYPGSNCPRIAATGNSIGIPQVSSNVSCNGIGFSESFIFQKVLQGQEILPSQPYGRALSVDEACGNGRFGPFDGNHTPRPSNGWSSHLSNKSSHLHPPVPSGQVSSPSSVLVFQQAVNPVSNSDYNSKISQVMEGKVHQQLSYTSEAKGGKFVSAPYEPQPLRGLVQEGTSSFGVSNLHNQLESSRSHDSISALRASKELVPTCKSRCRVFGFSLTEGAPVASTEVAAANPSAVTCSGPSFARHGEDGFHPTHPHRSKAVGSYCTKGVLQY 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02199 711 MobiDBLite consensus disorder prediction 518 543 - -
Viun3g02199 711 MobiDBLite consensus disorder prediction 509 543 - -
Viun3g02199 711 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Viun3g02199 711 SUPERFAMILY DNA-binding pseudobarrel domain 126 247 IPR015300 -
Viun3g02199 711 SMART B3_2 134 236 IPR003340 GO:0003677
Viun3g02199 711 FunFam Auxin response factor 132 236 - -
Viun3g02199 711 Pfam Auxin response factor 261 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun3g02199 711 Gene3D - 297 371 - -
Viun3g02199 711 Gene3D - 132 236 IPR015300 -
Viun3g02199 711 CDD B3_DNA 132 234 IPR003340 GO:0003677
Viun3g02199 711 FunFam Auxin response factor 297 368 - -
Viun3g02199 711 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Viun3g02199 711 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 657 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02199 Viun-Chr3 18539976 18548538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02199 22 488 B3 DNA Binding Superfamily AT5G60450 51.046 1.15e-143 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun3g02199 B3 9.3e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02199 K14486 - gmx:100808119 1186.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g02199 3 18539976 18548538 Viun3g02199 3 18539976 18548538 ECH