Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02190 ATGGACGATAAAAAGCAACAAAGTGTGCCGGTTCTACCATGGATGCGCCACCCCGTCGACGTCACTCGTTGTGAACAACTCTCCCTCCGCAGGATTCCTTTTCTGGACCGCAGGTTAAAGTTGGCGCTTGAGAACATGGAGATCTCGGAGCTGTTCTCTGTTCAAGTCGCGCTATGGCAAGAAACCATTGGACCAGGTAACTTTGAGCGAGACCTTTGTATAAACTCGCCCACAGGAAGTGGAAAAACCTTGGCCTATGCTCTTCCCATCGTGCAAAAGTTGTTGCCTACTTCCACTGTCAAGTGCCTTCGTGCTTTGGTTGTGGTTCCCACCCGCGACCTTGCCTTGCAGGTTAAACAGGTTTTCGATGCTATTGCATTGCCATTGGGCCTGCGTGTGGGCTTGGCTGTTGGTCAATCTTCGGTTGCTGATGAGATTTCTAGTCTCATTTACCTACCGGGGGAAGAGGAGGGTGTAGATCCTGGGTTTTTGTCTCCGTTCTGGTTTCAAAGTAAGGTGGACATATTGGTGGCAACCCCCGGAAGGCTTGTGGACCATGTCAACTTGTCAAGGGGTTTCACATTGAAGCATCTTCATTATCTTGTGGTTGATGAAGCTGATCGGTTGCTCCGGGAGGACTACCAGTCCTGGTTACCCACTGTACTTAAATCGACCCAATCTAGCAACAATGATGATGGTGGTGGTGATGGTGGTGATGATGTTTTCCAATTGGGGTTCCCTTATTCTCCCTGGAGTAGAAGAACATGTAGTGGTGTTGAGAGAGGGTCCAAGCCTTACTCTAGGCTGGCAAAGGTGGTTTTGTCTGCGACATTAACTCGAGATCCAGGAAGGCTTGTTCAGCTTAATTTGCATCACCCTTTGTTCCTCAATGCTGGCAAAATGCGGTATAGGCTCCCAGAAAATTTGGAATCATTCAAAGTGATCTGTGAAAGAAAGGTCAAACCCCTGTACTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGACTCAACACATCGTCTATGCAAATTGCTGAATTGTTTTGGAGATCTGCAAATCGACATCAAGGAGTATTCTGGTCATCAACATCAACGTGTAAGAAGCAAGACACTGAATGAGTTCAGAAAAGGGCAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTAGAAGGGGTAAGAAATGTTATTAATTATCACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTTACATTGATGTCAAATGATGAGGTTGGACGGTTTAAGAAGTTGATGAAAAAGGCTGAGGCTAGTGCATGTCTTGAGCATACTGTTCCATCCCATTTGATTGAAGAACTTCATAGTACCTACCAATCAGCACTATCAAAATTGAAGGAGATAATATTGGAGAGTCGCATGAAGCCCAAGAAGCCCAAGGCATAG 1506 0.4595 MDDKKQQSVPVLPWMRHPVDVTRCEQLSLRRIPFLDRRLKLALENMEISELFSVQVALWQETIGPGNFERDLCINSPTGSGKTLAYALPIVQKLLPTSTVKCLRALVVVPTRDLALQVKQVFDAIALPLGLRVGLAVGQSSVADEISSLIYLPGEEEGVDPGFLSPFWFQSKVDILVATPGRLVDHVNLSRGFTLKHLHYLVVDEADRLLREDYQSWLPTVLKSTQSSNNDDGGGDGGDDVFQLGFPYSPWSRRTCSGVERGSKPYSRLAKVVLSATLTRDPGRLVQLNLHHPLFLNAGKMRYRLPENLESFKVICERKVKPLYLVALLKSLGEEKCIVFTRSVDSTHRLCKLLNCFGDLQIDIKEYSGHQHQRVRSKTLNEFRKGQFQVLVSSDAMTRGMDVEGVRNVINYHMPKYIKTYVHRAGRTARAGQTGRCFTLMSNDEVGRFKKLMKKAEASACLEHTVPSHLIEELHSTYQSALSKLKEIILESRMKPKKPKA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02190 501 CDD SF2_C_DEAD 309 440 - -
Viun3g02190 501 Pfam Helicase conserved C-terminal domain 321 432 IPR001650 -
Viun3g02190 501 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 296 IPR014001 -
Viun3g02190 501 Gene3D - 14 299 IPR027417 -
Viun3g02190 501 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 474 IPR001650 -
Viun3g02190 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 453 IPR027417 -
Viun3g02190 501 CDD DEADc_DDX51 39 296 - -
Viun3g02190 501 Pfam DEAD/DEAH box helicase 68 282 IPR011545 GO:0003676|GO:0005524
Viun3g02190 501 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Viun3g02190 501 Gene3D - 307 500 IPR027417 -
Viun3g02190 501 SMART helicmild6 348 432 IPR001650 -
Viun3g02190 501 SMART ultradead3 47 312 IPR014001 -
Viun3g02190 501 PANTHER RNA HELICASE 35 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02190 Viun-Chr3 18425486 18436457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02190 57 446 Eukaryotic Initiation Factors Gene Family AT3G19760 24.041 1.55e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02190 K14807 - gmx:100789424 704.516