Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02188 ATGGACGATAAAAAGCAACAAAGTGTGCCGGTTCTACCATGGATGCGCCACCCCGTCGACGTCACTCGTTGTGAACAACTCTCCCTCCGCAGGATTCCTTTTCTGGACCGCAGGTTAAAGTTGGCGCTTGAGAACATGGAGATCTCGGAGCTGTTCTCTGTTCAAGTCGCGCTATGGCAAGAAACCATTGGACCAGGTAACTTTGAGCGAGACCTTTGTATAAACTCGCCCACAGGAAGTGGAAAAACCTTGGCCTATGCTCTTCCCATCGTGCAAAAGTTGTTGCCTACTTCCACTGTCAAGTGCCTTCGTGCTTTGGTTGTGGTTCCCACCCGCGACCTTGCCTTGCAGGTTAAACAGGTTTTCGATGCTATTGCATTGCCATTGGGCCTGCGTGTGGGCTTGGCTGTTGGTCAATCTTCGGTTGCTGATGAGATTTCTAGTCTCATTTACCTACCGGGGGAAGAGGAGGGTGTAGATCCTGGGTTTTTGTCTCCGTTCTGGTTTCAAAGTAAGGTGGACATATTGGTGGCAACCCCCGGAAGGCTTGTGGACCATGTCAACTTGTCAAGGGGTTTCACATTGAAGCATCTTCATTATCTTGTGGTTGATGAAGCTGATCGGTTGCTCCGGGAGGACTACCAGTCCTGGTTACCCACTGTACTTAAATCGACCCAATCTAGCAACAATGATGATGGTGGTGGTGATGGTGGTGATGATGTTTTCCAATTGGGGTTCCCTTATTCTCCCTGGAGTAGAAGAACATGTGGTGTTGAGAGAGGGTCCAAGCCTTACTCTAGGCTGGCAAAGGTGGTTTTGTCTGCGACATTAACTCGAGATCCAGGAAGGCTTGTTCAGCTTAATTTGCATCACCCTTTGTTCCTCAATGCTGGCAAAATGCGGTATAGGCTCCCAGAAAATTTGGAATCATTCAAAGTGATCTGTGAAAGAAAGGTCAAACCCCTGTACTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGACTCAACACATCGTCTATGCAAATTGCTGAATTGTTTTGGAGATCTGCAAATCGACATCAAGGAGTATTCTGGTCATCAACATCAACGTGTAAGAAGCAAGACACTGAATGAGTTCAGAAAAGGGCAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTAGAAGGGGTAAGAAATGTTATTAATTATCACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTTACATTGATGTCAAATGATGAGGTTGGACGGTTTAAGAAGTTGATGAAAAAGGCTGAGGCTAGTGCATGTCTTGAGCATACTGTTCCATCCCATTTGATTGAAGAACTTCATAGTACCTACCAATCAGCACTATCAAAATTGAAGGAGATAATATTGGAGAGTCGCATGAAGCCCAAGAAGCCCAAGGCATAG 1503 0.4597 MDDKKQQSVPVLPWMRHPVDVTRCEQLSLRRIPFLDRRLKLALENMEISELFSVQVALWQETIGPGNFERDLCINSPTGSGKTLAYALPIVQKLLPTSTVKCLRALVVVPTRDLALQVKQVFDAIALPLGLRVGLAVGQSSVADEISSLIYLPGEEEGVDPGFLSPFWFQSKVDILVATPGRLVDHVNLSRGFTLKHLHYLVVDEADRLLREDYQSWLPTVLKSTQSSNNDDGGGDGGDDVFQLGFPYSPWSRRTCGVERGSKPYSRLAKVVLSATLTRDPGRLVQLNLHHPLFLNAGKMRYRLPENLESFKVICERKVKPLYLVALLKSLGEEKCIVFTRSVDSTHRLCKLLNCFGDLQIDIKEYSGHQHQRVRSKTLNEFRKGQFQVLVSSDAMTRGMDVEGVRNVINYHMPKYIKTYVHRAGRTARAGQTGRCFTLMSNDEVGRFKKLMKKAEASACLEHTVPSHLIEELHSTYQSALSKLKEIILESRMKPKKPKA 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02188 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 295 IPR014001 -
Viun3g02188 500 CDD SF2_C_DEAD 308 439 - -
Viun3g02188 500 PANTHER RNA HELICASE 35 455 - -
Viun3g02188 500 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
Viun3g02188 500 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Viun3g02188 500 SMART helicmild6 347 431 IPR001650 -
Viun3g02188 500 CDD DEADc_DDX51 39 295 - -
Viun3g02188 500 SMART ultradead3 47 311 IPR014001 -
Viun3g02188 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 473 IPR001650 -
Viun3g02188 500 Gene3D - 306 499 IPR027417 -
Viun3g02188 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 452 IPR027417 -
Viun3g02188 500 Gene3D - 14 298 IPR027417 -
Viun3g02188 500 Pfam DEAD/DEAH box helicase 68 281 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02188 Viun-Chr3 18425481 18436457 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02188 57 445 Eukaryotic Initiation Factors Gene Family AT3G19760 24.103 1.19e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02188 K14807 - gmx:100789424 704.901