Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02174 ATGGAGCACTCAGAGGGTAGCACCAGCACCAGCAGCAACACCAATTCCCGTATCGGAAATTATGAACTGGGTCAGACTCTGGGCAAAGGAAACTTCTCCACCGTGAAGCTTGCACGTTGCCTTGACACCGGAGACAATGTGGCCATAAAAGTTTTCGGCAAGTACACGATTCTCGCCAACCAACCCAAGAACGAGCTGCGCAAGTTGGAGCGAAACTTGTTAATAATGAAAATGGTTAGACACCCTAATGTGGTGCATGTCATTGAGGAGATATATACCAAAACACATTTCTTTATTGTAACGGAACATGTAACTGGTGGGGAACTGTTTGATAAAGTTACAAACTCCGGGAGAATGACAGAGCCCGAAGCAAGAACATATTTTCAGCAGCTTATACATGCTGTGGATTACTGTCACAGTAAAGGTGTTTCCCATAAAAACTTAAAGCCAGAGAATCTGTTGGTGGATGCTGATGGAGTGCTTAAAATATTGGACTTTGGCATGAATATGCTGTCGCAACAAGTTGGACCAGATGGGTTGCTTCACACAGCACGTGGTGAGCCACAATATACCGCCCCAGAGGTGAAAATGAACATCGGCTATGAGGATGCAAAGTCTGACATCTGGTCATGTGGTGTTATTCTTTTTGTTCTATTGGCTGGATATTTACCCTTCAAATGTAAAGACATTGCCACTTTATGTCTAGAGATGTTTAAGGCTGATATCACATGTCCTTCATTTTTTTCTCCAAGTGTAAAGAGCCTAATTGAGAGAATCCTTGATCCCAATCCAGCTACACGGATTGCAATTAAGGAAATATTGGAAGATGAATGGTTCAAGAATGGGCCTCAATCCCCGAATTCTGATGAAAATTCACAGGGGCCTGCAGAACCTGCAGAACCTGTAGAACCTGTTCCCAAGAATGCATTTCAGAAAATGCGTGTCTCTCTGGGCTTCGATCATGTAGGAAATCTTCTGAACAAGGTACTTGGTAAAAAGGAAACAAGTTTCGTATCCAAATGCTCCGCAAATGAGATAATTTCAGGAATTGAACGTACTATAGCTTCTATGGGTTTTAATGTTAAGAAGAGAAAGTACAAGTTGAAGATTGAAGGGGAAAAGGATGAACACAAAGGTCATCTATCAATAGTCACTAAGATCTCTAAGGTGAACCCTTCCTTTTTCAAGGTTGAGGTTCGAAGGGATGGAGGAAATACTCTTGACTTTCATGAGTTCTACAGAGATCTATCTGCTGGGATGCGTGATATCATTTGGGTAGAGAAATCTGCCAACTCAGAAAGAGAAGATGGTGCAAGTACATCAACTGCAAGATAA 1335 0.4217 MEHSEGSTSTSSNTNSRIGNYELGQTLGKGNFSTVKLARCLDTGDNVAIKVFGKYTILANQPKNELRKLERNLLIMKMVRHPNVVHVIEEIYTKTHFFIVTEHVTGGELFDKVTNSGRMTEPEARTYFQQLIHAVDYCHSKGVSHKNLKPENLLVDADGVLKILDFGMNMLSQQVGPDGLLHTARGEPQYTAPEVKMNIGYEDAKSDIWSCGVILFVLLAGYLPFKCKDIATLCLEMFKADITCPSFFSPSVKSLIERILDPNPATRIAIKEILEDEWFKNGPQSPNSDENSQGPAEPAEPVEPVPKNAFQKMRVSLGFDHVGNLLNKVLGKKETSFVSKCSANEIISGIERTIASMGFNVKKRKYKLKIEGEKDEHKGHLSIVTKISKVNPSFFKVEVRRDGGNTLDFHEFYRDLSAGMRDIIWVEKSANSEREDGASTSTAR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02174 444 FunFam Maternal embryonic leucine zipper kinase 12 295 - -
Viun3g02174 444 CDD CIPK_C 308 417 - -
Viun3g02174 444 SUPERFAMILY Protein kinase-like (PK-like) 18 305 IPR011009 -
Viun3g02174 444 Gene3D Phosphorylase Kinase; domain 1 6 105 - -
Viun3g02174 444 ProSiteProfiles Protein kinase domain profile. 21 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02174 444 Pfam Protein kinase domain 21 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02174 444 Gene3D Kinase associated domain 1, KA1 302 426 - -
Viun3g02174 444 MobiDBLite consensus disorder prediction 279 303 - -
Viun3g02174 444 Gene3D Transferase(Phosphotransferase) domain 1 106 285 - -
Viun3g02174 444 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Viun3g02174 444 Pfam NAF domain 308 363 IPR004041 GO:0007165
Viun3g02174 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02174 Viun-Chr3 18352883 18355956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02174 14 435 CBL-interacting serine-threonine protein kinases AT1G01140 47.404 2.81e-145 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun3g02174 Pkinase 1.8e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02174 - - vum:124837064 674.47