LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g02137	ATGATTGGAAGTAAAGATCGTGTTGCTGAATCGGAGGGTGAGAACTCTAGGAGCAAGCTTTCAAGACACTATTTTGGGGCAAACAAGGAGTACCCAGATGAGAAAGGTGTTTTATTTCTGAGAGATTCACAGGTGGGTTGTGGTGGTGGTGGTGGTGGAGGTGTTGATGGGGTTCTTCGTCCAAAACCCACCGAGGTTGTTGTTGGGAGCTCGGGGTTCCAAGAGTTGACCCTCAGCTACCTTTGTGACAACCCAAAACTCAGTTTTTCCGAGAAAGAGAATCCTGGTAAAAGCTTGCTGAGTTCCTTTGAGAGAATAAGCCACAAAGGGAAAGAGGTTGTGGTTTGTGAGAACTCAAATCAGGATGGAAAATGGGTGGAAAGAGATTTCCTCAGCTTGAGTGAGCCACGAGAGGATTCTTCAAAGAGATCCCTTGAGGAAGTTGTTGAGAGGGAGAGTAATAAGGAGAAGAAGCAAAAACTGGAGACTCTCAATCTCTCTCTTGCTTTGCCTGATGTTTCTCTTTCCCTCACAGCTTCAAACGCCTTGCAAAATGGTGATCAACTAGTTAGGAATAAACCTTGTAGGCCATCCACTACTCACACTTCATATTCCAATGACTACACAGCAGCTTCTTTGTCTTACTCCTATTCCCACCCCTTCTCCCACAACCCAAGCTGCTCACTGACCCGCAATTCAACCGATAATTTTGAGTACTCTGTGAGCAAAGATGACCAAATTTGGAACTGTGGGGAGGGGACCAATGGGTCTGTGCATAGTAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGACCAGCCATGGTGCTGGTATTAGTTCCTTTATGCAAGGTAATAGTCAGTATAAAACTACTAGTTCAGATAACCATTCTTTTTTCCCTTCAGAGTTGCCTGCCAGGCCAAGGCTTGAGGCTCAGTCGGGGGACTCAAGGGGTAGGAACTCTGAGAATCTGAGAATCTTGGATGGCTTGGATGATGGGAAGGTAAGGAAACATTCCAGACCAGAGAGAATTGTTAGGGAGATTGTTTCAGAGTCTATCACTGTCATGGCATTGACAATTCAGGAGCTTACTGATGATGTCATAGCATCAACTAAGGAATACTTAAAGAATCTCATTGAAAAGCCTGAGAAGAAAGAGGAACTGGTAAGCCTTCAGAACCGGCTTGATAGAAGATCTGACCTAACAAAGGAGAGTCTTTCAAAGTGCCACAAAGTACAGTTAGAGGTTTTGGTGGCTCTCAAGATGGGGCTTGCCAGCTTCCTATCTAGCAAAGTTCAGTTGTCTGAGATGGTAGAGATTTTCTTGTATAAGAGGTGTAGGAATGTAACCTGCATGAGTTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGTTCAGGAAATAAGGGCTTTTGTAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAATAGCACTTGTAGTTGGATAGGATGTGATGTTTGTTCTCATTGGTGCCATGCTACCTGTGGCATTCAGAGAAATCTTATCAAGCCTGGACCTAGCTTGAAGGGGCCTTCAGGGACCTCAGAGGTTCAGTTTCATTGTCTCGGATGTGGACATGCCTCGGAAATGTTTGGTTTTGTAAAAGACGTGTTTCTGTGTTGTGCAAAGGATTGGGGTCTTGAAACCTTGATGAAGGAGCTTGACTGTGTAAGGAGGATCTTCAGGGCAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAACTGATGACTTGCTATTAAAGCTTCAAACTAAAATGGTATCTCCTTTGGACGCTTGCAATTACATCGTACAATTTTTCAACTACGCAGATAGCATGCCAGATTTTCCTGCTTCTGCTGGTGTTTCTTCAAAGGATTTGGCAGCCTCTCAAACTAACCTTACAAAGGATATACCATCTCTTTCAAAACCTAACCCTCTATTACCAAATTATGGGTATGAGATGGGCTATTCTAGGTCACATCCTGATGCCATGTCAAGGGAAGTAGTTCAGAAAGACCTCAAAGCTTCCATGTTGAGTGAACTGAAAAATGAGGCTGATTTCCATTTGGGGGCCTTATTAAGAAAAGGTGGACTTGAAAGTTTGGGAAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCAAGAAGAGAGGCAGAAGGGTTCCAGAGAATGATCAGGACGAAGACTGCCCAGATGGAAGAGGAGTATGCTGAAAAGCTTTCCAAACTCTGCTTGCACGAGACTGAGGAAACACAGAGGAAGAAAATGGATGAACTCAAAGTCTTGGAAAATTCCTATTTTGATTACTATAAAATGAAAAAGAGAATGCAAGAAGAGATTGATGGTTTGTTGCGGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAG	2430	0.437	MIGSKDRVAESEGENSRSKLSRHYFGANKEYPDEKGVLFLRDSQVGCGGGGGGGVDGVLRPKPTEVVVGSSGFQELTLSYLCDNPKLSFSEKENPGKSLLSSFERISHKGKEVVVCENSNQDGKWVERDFLSLSEPREDSSKRSLEEVVERESNKEKKQKLETLNLSLALPDVSLSLTASNALQNGDQLVRNKPCRPSTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDNFEYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVALTSHGAGISSFMQGNSQYKTTSSDNHSFFPSELPARPRLEAQSGDSRGRNSENLRILDGLDDGKVRKHSRPERIVREIVSESITVMALTIQELTDDVIASTKEYLKNLIEKPEKKEELVSLQNRLDRRSDLTKESLSKCHKVQLEVLVALKMGLASFLSSKVQLSEMVEIFLYKRCRNVTCMSLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCANSTCSWIGCDVCSHWCHATCGIQRNLIKPGPSLKGPSGTSEVQFHCLGCGHASEMFGFVKDVFLCCAKDWGLETLMKELDCVRRIFRASEDRKGKELHVKTDDLLLKLQTKMVSPLDACNYIVQFFNYADSMPDFPASAGVSSKDLAASQTNLTKDIPSLSKPNPLLPNYGYEMGYSRSHPDAMSREVVQKDLKASMLSELKNEADFHLGALLRKGGLESLGSIVRIKEAEARMFQTKADEARREAEGFQRMIRTKTAQMEEEYAEKLSKLCLHETEETQRKKMDELKVLENSYFDYYKMKKRMQEEIDGLLRRMEATKQQWV	809

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g02137	809	CDD	PHD_OBE1_like	476	535	IPR047578	-
	Viun3g02137	809	MobiDBLite	consensus disorder prediction	136	156	-	-
	Viun3g02137	809	MobiDBLite	consensus disorder prediction	284	299	-	-
	Viun3g02137	809	Pfam	Coiled-coil region of Oberon	670	798	IPR032535	-
	Viun3g02137	809	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	556	575	IPR004082	-
	Viun3g02137	809	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	705	725	IPR004082	-
	Viun3g02137	809	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	483	503	IPR004082	-
	Viun3g02137	809	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	398	413	IPR004082	-
	Viun3g02137	809	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	359	381	IPR004082	-
	Viun3g02137	809	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	437	458	IPR004082	-
	Viun3g02137	809	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	744	766	IPR004082	-
	Viun3g02137	809	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	107	808	IPR004082	-
	Viun3g02137	809	Coils	Coil	711	745	-	-
	Viun3g02137	809	Pfam	PHD - plant homeodomain finger protein	446	570	IPR032881	-
	Viun3g02137	809	MobiDBLite	consensus disorder prediction	284	325	-	-
	Viun3g02137	809	Coils	Coil	759	779	-	-
	Viun3g02137	809	Coils	Coil	787	807	-	-
	Viun3g02137	809	MobiDBLite	consensus disorder prediction	1	23	-	-
	Viun3g02137	809	Coils	Coil	142	162	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g02137	Viun-Chr3	17710394	17714868	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g02137	446	543	PHD Gene Family	AT5G57380	28.571	2.05e-07	52.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g02137	-		-	gmx:100820216	1433.31