Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02136 ATGATTGGAAGTAAAGATCGTGTTGCTGAATCGGAGGGTGAGAACTCTAGGAGCAAGCTTTCAAGACACTATTTTGGGGCAAACAAGGAGTACCCAGATGAGAAAGGTGTTTTATTTCTGAGAGATTCACAGGTGGGTTGTGGTGGTGGTGGTGGTGGAGGTGTTGATGGGGTTCTTCGTCCAAAACCCACCGAGGTTGTTGTTGGGAGCTCGGGGTTCCAAGAGTTGACCCTCAGCTACCTTTGTGACAACCCAAAACTCAGTTTTTCCGAGAAAGAGAATCCTGGTAAAAGCTTGCTGAGTTCCTTTGAGAGAATAAGCCACAAAGGGAAAGAGGTTGTGGTTTGTGAGAACTCAAATCAGGATGGAAAATGGGTGGAAAGAGATTTCCTCAGCTTGAGTGAGCCACGAGAGGATTCTTCAAAGAGATCCCTTGAGGAAGTTGTTGAGAGGGAGAGTAATAAGGAGAAGAAGCAAAAACTGGAGACTCTCAATCTCTCTCTTGCTTTGCCTGATGTTTCTCTTTCCCTCACAGCTTCAAACGCCTTGCAAAATGGTGATCAACTAGTTAGGAATAAACCTTGTAGGCCATCCACTACTCACACTTCATATTCCAATGACTACACAGCAGCTTCTTTGTCTTACTCCTATTCCCACCCCTTCTCCCACAACCCAAGCTGCTCACTGACCCGCAATTCAACCGATAATTTTGAGTACTCTGTGAGCAAAGATGACCAAATTTGGAACTGTGGGGAGGGGACCAATGGGTCTGTGCATAGTAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGACCAGCCATGGTGCTGGTATTAGTTCCTTTATGCAAGGTAATAGTCAGTATAAAACTACTAGTTCAGATAACCATTCTTTTTTCCCTTCAGAGTTGCCTGCCAGGCCAAGGCTTGAGGCTCAGTCGGGGGACTCAAGGGGTAGGAACTCTGAGAATCTGAGAATCTTGGATGGCTTGGATGATGGGAAGGTAAGGAAACATTCCAGACCAGAGAGAATTGTTAGGGAGATTGTTTCAGAGTCTATCACTGTCATGGCATTGACAATTCAGGAGCTTACTGATGATGTCATAGCATCAACTAAGGAATACTTAAAGAATCTCATTGAAAAGCCTGAGAAGAAAGAGGAACTGGTAAGCCTTCAGAACCGGCTTGATAGAAGATCTGACCTAACAAAGGAGAGTCTTTCAAAGTGCCACAAAGTACAGTTAGAGGTTTTGGTGGCTCTCAAGATGGGGCTTGCCAGCTTCCTATCTAGCAAAGTTCAGTTGTCTGAGATGGTAGAGATTTTCTTGTATAAGAGGTGTAGGAATGTAACCTGCATGAGTTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGTTCAGGAAATAAGGGCTTTTGTAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAATAGCACTTGTAGTTGGATAGGATGTGATGTTTGTTCTCATTGGTGCCATGCTACCTGTGGCATTCAGAGAAATCTTATCAAGCCTGGACCTAGCTTGAAGGGGCCTTCAGGGACCTCAGAGGTTCAGTTTCATTGTCTCGGATGTGGACATGCCTCGGAAATGTTTGGTTTTGTAAAAGACGTGTTTCTGTGTTGTGCAAAGGATTGGGGTCTTGAAACCTTGATGAAGGAGCTTGACTGTGTAAGGAGGATCTTCAGGGCAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAACTGATGACTTGCTATTAAAGCTTCAAACTAAAATGACGCAGATAGCATGCCAGATTTTCCTGCTTCTGCTGGTGTTTCTTCAAAGGATTTGGCAGCCTCTCAAACTAACCTTACAAAGGATATACCATCTCTTTCAAAACCTAACCCTCTATTACCAAATTATGGGTATGAGATGGGCTATTCTAGGTCACATCCTGATGCCATGTCAAGGGAAGTAG 1977 0.4416 MIGSKDRVAESEGENSRSKLSRHYFGANKEYPDEKGVLFLRDSQVGCGGGGGGGVDGVLRPKPTEVVVGSSGFQELTLSYLCDNPKLSFSEKENPGKSLLSSFERISHKGKEVVVCENSNQDGKWVERDFLSLSEPREDSSKRSLEEVVERESNKEKKQKLETLNLSLALPDVSLSLTASNALQNGDQLVRNKPCRPSTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDNFEYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVALTSHGAGISSFMQGNSQYKTTSSDNHSFFPSELPARPRLEAQSGDSRGRNSENLRILDGLDDGKVRKHSRPERIVREIVSESITVMALTIQELTDDVIASTKEYLKNLIEKPEKKEELVSLQNRLDRRSDLTKESLSKCHKVQLEVLVALKMGLASFLSSKVQLSEMVEIFLYKRCRNVTCMSLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCANSTCSWIGCDVCSHWCHATCGIQRNLIKPGPSLKGPSGTSEVQFHCLGCGHASEMFGFVKDVFLCCAKDWGLETLMKELDCVRRIFRASEDRKGKELHVKTDDLLLKLQTKMTQIACQIFLLLLVFLQRIWQPLKLTLQRIYHLFQNLTLYYQIMGMRWAILGHILMPCQGK 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02136 658 Pfam PHD - plant homeodomain finger protein 446 570 IPR032881 -
Viun3g02136 658 CDD PHD_OBE1_like 476 535 IPR047578 -
Viun3g02136 658 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 107 607 IPR004082 -
Viun3g02136 658 MobiDBLite consensus disorder prediction 136 156 - -
Viun3g02136 658 MobiDBLite consensus disorder prediction 284 299 - -
Viun3g02136 658 MobiDBLite consensus disorder prediction 284 325 - -
Viun3g02136 658 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 359 381 IPR004082 -
Viun3g02136 658 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 437 458 IPR004082 -
Viun3g02136 658 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 483 503 IPR004082 -
Viun3g02136 658 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 398 413 IPR004082 -
Viun3g02136 658 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 556 575 IPR004082 -
Viun3g02136 658 MobiDBLite consensus disorder prediction 1 23 - -
Viun3g02136 658 Coils Coil 142 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02136 Viun-Chr3 17710392 17714459 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02136 446 543 PHD Gene Family AT5G57380 28.571 1.47e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02136 - - gmx:100820216 1066.6