Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02132 ATGATGACTCCAAACTTGAACTTGGAACCTGAAAATCATTCAGAAGGAAGTAGCCAGGTGGCATCGAATGTATCCTTGCATGAAGCATCTTATGATCTTACAAAGGGCAGCACCACCACTTCCTCCTGTCTCACAAAGGATGAAACTGATCCAGGTTCTGTTACCCTTGACTTGACACTCAACTTCAATTCCAGTGATAGTGAGTTGAAAGGTTCTAGTGATGCTAGCAGTGAAGTGGGAGCTGAACCTCCTGCTTCAGCATCAGCAACAGCAACTCCCAGGGTTTTTTCTTGTAACTACTGCAGGAGGAAGTTCTATAGTTCGCAGGCATTAGGGGGCCATCAAAATGCTCACAAAAGGGAGAGGACAATGGCTAAGCGTGCATTGAGAATGGGAATGTTCACTGAGAGGTACACAAGTTTGGCATCTCTACCTCTTCATGGTTCACCTTTTAGGTCTCTTGGTCTTGAAGCTCATTCTGCAATGCACCAAAGACACGTCTCATCCTCACTGAGAACTCCTGATATGAGAGCCGCTGCAAGATTTGAGAGAAACCATTTTGGATCACTGGTTTTCGTGGAAGATGATGATGTTGGATTGTTTTGGCCTGGAAGTTTCAGACAGGTAGACCAGGGAGCTGGTGTTACTGAAGGACATGTTCAGAGCTCAAATCCCAGTCTTGTTCCAATTGTGCCTCCTCCACCACAAGCTTCTGCATCTCCTGATCTCACATTGAAGCTTTGA 744 0.457 MMTPNLNLEPENHSEGSSQVASNVSLHEASYDLTKGSTTTSSCLTKDETDPGSVTLDLTLNFNSSDSELKGSSDASSEVGAEPPASASATATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRALRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHQRHVSSSLRTPDMRAAARFERNHFGSLVFVEDDDVGLFWPGSFRQVDQGAGVTEGHVQSSNPSLVPIVPPPPQASASPDLTLKL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02132 247 MobiDBLite consensus disorder prediction 213 247 - -
Viun3g02132 247 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 169 IPR044246 GO:0009788
Viun3g02132 247 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g02132 247 Gene3D Classic Zinc Finger 84 142 - -
Viun3g02132 247 SUPERFAMILY beta-beta-alpha zinc fingers 94 124 IPR036236 -
Viun3g02132 247 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Viun3g02132 247 MobiDBLite consensus disorder prediction 65 88 - -
Viun3g02132 247 FunFam Zinc finger protein 2 72 142 - -
Viun3g02132 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02132 Viun-Chr3 17697735 17701950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02132 90 247 C2H2 Transcription Factor Family AT1G66140 46.196 3.33e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun3g02132 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02132 - - gmx:100775305 419.083