Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02127 ATGGCTAATTTGGTAATGAATGATGATGAAAATGCTCCAATTACCTTCTTATTCCTTGCATCAATGTTCTTGGTCTTGGTGGCATCAACCAGTTCCCAAGAAGAGAACAAACACGAAGAGTGTAGCAAGCCATTCAGCTGCGGACAAATATCCATCTACTACCCTTTCTGGGGAGGGAGCAGACCCAGTTATTGTTCCAGCAATCACCAATTCAAGCTCAACTGTGAGGGTAATCAAAACTCCACCCTTCAACTTGGCTCACAAACTTTCCAAGTTCTTCACTTTGATCCAGTTCAGTACACCGTGAAAATGCTTCGAACGGGCCTTGTCTATGATAATTGCTCTTCCTCGGCCGTGACCAACAACACCGTGGATTCAAATCTCTTTAGCTACTCGAATGTTAGGAACATCACCATCTACTATGGTTGTCCCTACTCCCTGATTTCAAACACCACACGCTCTTTTCAATGCAAGGATGATGGCAACAAGAGTGCATTCTATGGGGACCCTGCAACTGAGAAAGTCCAAGACTGTGATGGAGCTAGGATTGAAGTGCAAGTAGCACAGGAACTTGACCCTGATGGGGGAATTCAAGGACTCAACAAAGCCTTGAGTGAAGGGTTTGAAATACATCTTATTTCAGAGACACAAGTTCAGCAGTGCTTAGAATGCATTTTAACTAATGGAACATGTGGGGCTAATGATGAGTCTCAGTTTTCATGTTTCTGCCCCGATGGAAGTGAAGGTTTAAATTGCTCTGGTCATAATAGCGATACATGGAACTGGCAAAGGAAGCTGGTTATAGGTGTTGCTGCTGCTGTGATGAGTGGAATTGTAGTTGGCCTTGGCTTTTACATATATTATGGTCGTCTAAAGAAGAATCATCTTCATGCAGTAACATCTTCTGTACTATATAATCCTAAAGGAGTCTCACGTAGTTCTTCTTTAGAAGACTCTGAGAAGGGAAGTAAATACTTTGGAGTCCACTTCTTCACCCATAGTGAACTTGAAGAGGCCACAAACTTCTTTAATCCTGACAGAGAACTAGGAGATGGAGGATTTGGAAAAGTGTATTTTGGGAAACTTCAGGATGGACGATTAGTTGCAGTGAAGAGAATGTACGAGAACAGTTTGAAAGTTGAGCAATTCGTGAATGAAGTGGAGATCTTAACTGGCTTACACCACCAGAACCTTGTGTCTCTATATGGATGCACTCCTCGCAACAGCAGAGAACTTCTTCTGGTGTACGAATACATTCCAAATGGAACTGTCGCTGATCATCTTCATGGTCAAAGAGCAAAACCTGGCACACTCCCTTGGCACATAAGAATGAACATTGCCATTGAAACTGCTAGTGCATTGGTATATCTCCACGCTTCTGATATCATCCACAGAGACGTAAAAACCAGCAACATTCTCCTCGACAACCACTTCAGTGTGAAAGTAGCCGATTTTGGCCTCTCACGCCCCTTCCCAATCCATGCCTCACACGTTTCCACCGCCCCACAAGGAACTCCTGGTTATGTGGATCCAGAGTATCACGAGTACTACCAACTCACCGATAAGAGTGATGTTTATAGCTTCGGGGTGGTGCTGATTGAGCTCATATCTTCCATGCATGCGGTTGATATCTCAAGGCGTAGGCACGAGATCCACTTGTCCAACATGGCCATCAAGAAGATCCAAAGTGGTGCGTTGCATGAGATTGTGGATCCAAGTTTAGGGTTTGAGTCGGATTTCAAGGTGAGGAAAATGATCAATGCAGTGGCTGAGTTGGCGTTTCAGTGCTTGCAGAGTTCCAATGTGAGGCCCTCTATGGCAGAAGTGTTGGATAGACTTGAGGATATAAGAAGTGATGGGAAGTATAAGAGCAAGCATGAGGTGCTTGATATATCAGAAGATCATGCTGCTTTGCTCAAGAATGAACCTCCTCCTCCTTCACCTGATTCAAATTTCCAAACTGTAGTATAG 1971 0.4394 MANLVMNDDENAPITFLFLASMFLVLVASTSSQEENKHEECSKPFSCGQISIYYPFWGGSRPSYCSSNHQFKLNCEGNQNSTLQLGSQTFQVLHFDPVQYTVKMLRTGLVYDNCSSSAVTNNTVDSNLFSYSNVRNITIYYGCPYSLISNTTRSFQCKDDGNKSAFYGDPATEKVQDCDGARIEVQVAQELDPDGGIQGLNKALSEGFEIHLISETQVQQCLECILTNGTCGANDESQFSCFCPDGSEGLNCSGHNSDTWNWQRKLVIGVAAAVMSGIVVGLGFYIYYGRLKKNHLHAVTSSVLYNPKGVSRSSSLEDSEKGSKYFGVHFFTHSELEEATNFFNPDRELGDGGFGKVYFGKLQDGRLVAVKRMYENSLKVEQFVNEVEILTGLHHQNLVSLYGCTPRNSRELLLVYEYIPNGTVADHLHGQRAKPGTLPWHIRMNIAIETASALVYLHASDIIHRDVKTSNILLDNHFSVKVADFGLSRPFPIHASHVSTAPQGTPGYVDPEYHEYYQLTDKSDVYSFGVVLIELISSMHAVDISRRRHEIHLSNMAIKKIQSGALHEIVDPSLGFESDFKVRKMINAVAELAFQCLQSSNVRPSMAEVLDRLEDIRSDGKYKSKHEVLDISEDHAALLKNEPPPPSPDSNFQTVV 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02127 656 Pfam Wall-associated receptor kinase C-terminal 173 246 IPR032872 -
Viun3g02127 656 Pfam Protein kinase domain 345 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02127 656 ProSiteProfiles Protein kinase domain profile. 343 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02127 656 Gene3D Phosphorylase Kinase; domain 1 313 418 - -
Viun3g02127 656 SUPERFAMILY Protein kinase-like (PK-like) 325 618 IPR011009 -
Viun3g02127 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Viun3g02127 656 SMART serkin_6 343 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02127 656 Gene3D Transferase(Phosphotransferase) domain 1 419 630 - -
Viun3g02127 656 FunFam Wall-associated receptor kinase-like 20 419 626 - -
Viun3g02127 656 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 651 IPR044652 GO:0004672
Viun3g02127 656 Pfam Wall-associated receptor kinase galacturonan-binding 41 104 IPR025287 GO:0030247
Viun3g02127 656 MobiDBLite consensus disorder prediction 637 656 - -
Viun3g02127 656 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Viun3g02127 656 ProSitePatterns EGF-like domain signature 1. 241 252 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02127 Viun-Chr3 17666644 17669903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02127 43 650 Receptor kinase-like Gene Family AT1G25390 43.175 2.10e-142 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Viun3g02127 Pkinase 8.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02127 - - vra:106766190 1189.87