Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02120 ATGGCTGCGCAAGAGCAGAAGATTTTTGCCTACGAAACCTTGGCTGCTGTCACCAAGAATTTTAGTAATATTCACAAGCTAGGCGAGGGAGGTTTTGGCCCTGTCTACAAGGGGAAGCTGAATGATGGAAGAGAGATTGCTGTGAAGAAGTTATCACAGAGTTCAAATCAAGGGAAAAAAGAGTTCATGAACGAGGCCAAGTTATTGGCTCGTGTGCAGCATCGGAATGTGGTGAATTTGGTGGGTTATTGTGTCCACGGGAACGAAAAGCTACTTGTTTATGAGTATGTTGCTCATGAAAGCCTAGACAAGTTTCTTTTCAAATCACAAAAGAGAGAGAAGTTGGATTGGAAACGTAGGTTGGGCATAATCACAGGCGTGGCAAAGGGGTTACTTTATCTACACGAAGACTCACACAATTGCATCATCCATCGTGACATCAAGGCCAGTAATATCTTGCTTGATGACAAATGGACGCCCAAGATTGCAGATTTCGGCATGGCGCGTCTCTTCCCTGAAGATCAGACCCAAGTCAACACACGTGTGGCTGGAACCAATGGATACATGGCTCCAGAATATGTTATGCATGGAAATTTATCAGTGAAGGCAGATGTATTTAGTTATGGAGTTTTGGTACTGGAGTTGATCACCGGCCACAGAAACTCCTCTTTCAATTTGGATGTGGACGCCCAGAACATGCTTGATTGGGCATACAAGATGTACAAGAAAGGGAAGAGCTTAGAAATTGTGGATCCAACGTTAGCAGGTACAATGGTAGATGAAGAGGTAGCAATGTGCATTCAAATGGGTTTGTTATGCACTCAAGGTGATCCACAGCTACGTCCCACGATGAGGCGTGTGGTGGTGATGTTGTCAAGGAAACCAGGCCAGATGCAGGAACCATCGAGACCAGGGGTGCCTGGTTCAAGATACAGAAGACCTCGAAGACACTCTGCATTGTCTTCCACATTGGGTACCTCAGGTGCCTCCGATTCACACACTTTTGATTCAAGTAATTATACCACTGTCACTAACAGTGCCACTGGGACCAGCTCTGCCACAGTTGAAACAGACCCCAAAGGTAAACGTCCAATGCGGGAGGGTTAG 1107 0.4589 MAAQEQKIFAYETLAAVTKNFSNIHKLGEGGFGPVYKGKLNDGREIAVKKLSQSSNQGKKEFMNEAKLLARVQHRNVVNLVGYCVHGNEKLLVYEYVAHESLDKFLFKSQKREKLDWKRRLGIITGVAKGLLYLHEDSHNCIIHRDIKASNILLDDKWTPKIADFGMARLFPEDQTQVNTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGHRNSSFNLDVDAQNMLDWAYKMYKKGKSLEIVDPTLAGTMVDEEVAMCIQMGLLCTQGDPQLRPTMRRVVVMLSRKPGQMQEPSRPGVPGSRYRRPRRHSALSSTLGTSGASDSHTFDSSNYTTVTNSATGTSSATVETDPKGKRPMREG 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02120 368 CDD STKc_IRAK 27 293 - -
Viun3g02120 368 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 339 - -
Viun3g02120 368 FunFam Cysteine-rich receptor-like protein kinase 10 1 96 - -
Viun3g02120 368 SUPERFAMILY Protein kinase-like (PK-like) 6 303 IPR011009 -
Viun3g02120 368 Pfam Protein tyrosine and serine/threonine kinase 24 290 IPR001245 GO:0004672|GO:0006468
Viun3g02120 368 FunFam Cysteine-rich receptor-like protein kinase 10 98 303 - -
Viun3g02120 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Viun3g02120 368 MobiDBLite consensus disorder prediction 295 368 - -
Viun3g02120 368 Gene3D Transferase(Phosphotransferase) domain 1 98 302 - -
Viun3g02120 368 ProSiteProfiles Protein kinase domain profile. 21 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02120 368 MobiDBLite consensus disorder prediction 319 357 - -
Viun3g02120 368 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Viun3g02120 368 SMART serkin_6 21 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02120 Viun-Chr3 17606601 17611155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02120 9 305 Receptor kinase-like Gene Family AT4G11530 51.839 2.18e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g02120 PK_Tyr_Ser-Thr 1.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02120 - - var:108347873 705.286