Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02119 ATGGACAGGGACAAGGACAAGTCTCACACTCGCTGTTTTTTTCACAGTTTTGTTAAACACTTCAAATTCGGTTCCAGTAAAGAGGGAAACGATGAAGCTGATATACAGAGAATGGCTGCGCAAGAGCAGAAGATTTTTGCCTACGAAACCTTGGCTGCTGTCACCAAGAATTTTAGTAATATTCACAAGCTAGGCGAGGGAGGTTTTGGCCCTGTCTACAAGGGGAAGCTGAATGATGGAAGAGAGATTGCTGTGAAGAAGTTATCACAGAGTTCAAATCAAGGGAAAAAAGAGTTCATGAACGAGGCCAAGTTATTGGCTCGTGTGCAGCATCGGAATGTGGTGAATTTGGTGGGTTATTGTGTCCACGGGAACGAAAAGCTACTTGTTTATGAGTATGTTGCTCATGAAAGCCTAGACAAGTTTCTTTTCAAATCACAAAAGAGAGAGAAGTTGGATTGGAAACGTAGGTTGGGCATAATCACAGGCGTGGCAAAGGGGTTACTTTATCTACACGAAGACTCACACAATTGCATCATCCATCGTGACATCAAGGCCAGTAATATCTTGCTTGATGACAAATGGACGCCCAAGATTGCAGATTTCGGCATGGCGCGTCTCTTCCCTGAAGATCAGACCCAAGTCAACACACGTGTGGCTGGAACCAATGGATACATGGCTCCAGAATATGTTATGCATGGAAATTTATCAGTGAAGGCAGATGTATTTAGTTATGGAGTTTTGGTACTGGAGTTGATCACCGGCCACAGAAACTCCTCTTTCAATTTGGATGTGGACGCCCAGAACATGCTTGATTGGGCATACAAGATGTACAAGAAAGGGAAGAGCTTAGAAATTGTGGATCCAACGTTAGCAGGTACAATGGTAGATGAAGAGGTAGCAATGTGCATTCAAATGGGTTTGTTATGCACTCAAGGTGATCCACAGCTACGTCCCACGATGAGGCGTGTGGTGGTGATGTTGTCAAGGAAACCAGGCCAGATGCAGGAACCATCGAGACCAGGGGTGCCTGGTTCAAGATACAGAAGACCTCGAAGACACTCTGCATTGTCTTCCACATTGGGTACCTCAGGTGCCTCCGATTCACACACTTTTGATTCAAGTAATTATACCACTGTCACTAACAGTGCCACTGGGACCAGCTCTGCCACAGTTGAAACAGACCCCAAAGGTAAACGTCCAATGCGGGAGGGTTAG 1218 0.454 MDRDKDKSHTRCFFHSFVKHFKFGSSKEGNDEADIQRMAAQEQKIFAYETLAAVTKNFSNIHKLGEGGFGPVYKGKLNDGREIAVKKLSQSSNQGKKEFMNEAKLLARVQHRNVVNLVGYCVHGNEKLLVYEYVAHESLDKFLFKSQKREKLDWKRRLGIITGVAKGLLYLHEDSHNCIIHRDIKASNILLDDKWTPKIADFGMARLFPEDQTQVNTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGHRNSSFNLDVDAQNMLDWAYKMYKKGKSLEIVDPTLAGTMVDEEVAMCIQMGLLCTQGDPQLRPTMRRVVVMLSRKPGQMQEPSRPGVPGSRYRRPRRHSALSSTLGTSGASDSHTFDSSNYTTVTNSATGTSSATVETDPKGKRPMREG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02119 405 SUPERFAMILY Protein kinase-like (PK-like) 43 340 IPR011009 -
Viun3g02119 405 FunFam Cysteine-rich receptor-like protein kinase 10 135 340 - -
Viun3g02119 405 Gene3D Phosphorylase Kinase; domain 1 20 133 - -
Viun3g02119 405 SMART serkin_6 58 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02119 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Viun3g02119 405 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 376 - -
Viun3g02119 405 Gene3D Transferase(Phosphotransferase) domain 1 135 339 - -
Viun3g02119 405 ProSiteProfiles Protein kinase domain profile. 58 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02119 405 MobiDBLite consensus disorder prediction 356 394 - -
Viun3g02119 405 FunFam Cysteine-rich receptor-like protein kinase 10 22 133 - -
Viun3g02119 405 Pfam Protein tyrosine and serine/threonine kinase 61 327 IPR001245 GO:0004672|GO:0006468
Viun3g02119 405 MobiDBLite consensus disorder prediction 332 405 - -
Viun3g02119 405 CDD STKc_IRAK 64 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02119 Viun-Chr3 17606600 17611155 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02119 46 342 Receptor kinase-like Gene Family AT4G11530 51.839 6.02e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g02119 PK_Tyr_Ser-Thr 2.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02119 - - var:108347873 771.926