Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02114 ATGGGGCGTGGAAGGATACCTATGGATCTGATAGAGAAAGAGAAGGCTCGAAAAACAACATTTCAGAAGAGAAAGAACGGATTAATTAAGAAAGTTTACGAGTTTTCGACTCTTTGTTCAGTTGACGTTGGTGTGATTATCTTTGCCTCAAAGTTTCTTGATGAACCTGAAATATGGCCACAGGAGCCAAGAGAGTTCAAACGTGTGATTCAGAAATATCTGAACACCACCAGTGATAGACGTTCAAAGGTGTATGACGTGGAAGAGTATTTTAGTGAAAGAATGAAAAGGATCGAAGGCGAGATTTCCAAAGTGCAGAAAGGGAAGATCCAGCTCTTGTATCCAACCTGGGATGACTCTTACAATGTTCTTAAAGAGGAACAATTGAGGATGTTTGTTAGCATTCTGGATGCTAAGCTTGATGTTTGTAATCAAAGGATGAACATGTTCAAGCGTGATTCAAAGGGGAAAGCAATAGCAGAATCGGAGAATGATGAAACACTTGTTCCCTATTTGACTCCAACTTTAGGTTTCATGCACAACATGTCTCAAACACAGGTTTTCTCTACTAATGATAACAATCAAGTACCATTTTATCCATGTCATCTGAGCCAAAGTTCTCTACCTTTGTTTCAATTGGGTCAAAACTTTACCCAATTGATGGAAAAAAGTGCAGCAGTGGATTGGGGTAATCAAGTTGGTGCAAGTGATCACAAAATGGGTACACAGAAGGAGGATGGATTAGACAAAAATCAAAACTTCTCTTCGTGTTATTACAATGCAGATATAACAATGCAGCCATATAATATTAATAATGTTGCTTTTCAAACTCTTCCTTCTCAATTGCAGTGCGATGCAACGTTCCAGAGCCTGTCAAATCGACCAAGTCCATCACAGAGATTTGAACCTAATGGCTATGACGATTCTAATATGCTTCAACCTCATTTTTTAAACTATATGCACAGAAGAAAGTAG 975 0.3856 MGRGRIPMDLIEKEKARKTTFQKRKNGLIKKVYEFSTLCSVDVGVIIFASKFLDEPEIWPQEPREFKRVIQKYLNTTSDRRSKVYDVEEYFSERMKRIEGEISKVQKGKIQLLYPTWDDSYNVLKEEQLRMFVSILDAKLDVCNQRMNMFKRDSKGKAIAESENDETLVPYLTPTLGFMHNMSQTQVFSTNDNNQVPFYPCHLSQSSLPLFQLGQNFTQLMEKSAAVDWGNQVGASDHKMGTQKEDGLDKNQNFSSCYYNADITMQPYNINNVAFQTLPSQLQCDATFQSLSNRPSPSQRFEPNGYDDSNMLQPHFLNYMHRRK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02114 324 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 49 IPR002100 GO:0003677|GO:0046983
Viun3g02114 324 PANTHER MADS BOX PROTEIN 3 126 - -
Viun3g02114 324 CDD MADS 2 51 - -
Viun3g02114 324 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Viun3g02114 324 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Viun3g02114 324 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Viun3g02114 324 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun3g02114 324 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun3g02114 324 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun3g02114 324 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02114 Viun-Chr3 17501074 17502048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02114 1 118 Type I MADS-box Gene Family AT5G55690 39.837 6.21e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun3g02114 SRF-TF 3.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02114 - - gmx:102660566 396.356