Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02097 ATGGAGAAAAACCATGTTCAGCTTTTGCCTCATCTCACTGTGACACTTCTAGTGATCACTGTTTTGTTTCCTGTGACTGAATGTGCGGCAGTTTCCTCCATCAAGACTGATGCGCAGGCTCTTCTCATGTTCAAAAGGATGATTCAGAAGGATCAAAGCGGAGTTTTGTCAGGGTGGAAGCTCAATAAGAATCCATGCACCTGGTATGGGGTCTCTTGCACCCATGGAAGAGTTACTCAGCTTGATATCAGTGGGAATAATGACCTTGCTGGGACAATATCTCTTGACCCTTTGTCTTCTATGGATATGTTATCTGTTCTGAAACTGTCTTTGAATTCATTTTCTGTAAATTCTACCTCTTTGCTTCACCTACCATATGGTTTGACACAGCTTGATCTATCCTTTGGAGGAGTTACAGGCCCTGTCCCTGACAACCTTTTCTCCAAGTGTCCAAATCTTGTTGTTGTTAATCTTTCCTACAACAACTTAACAGGCCCTATTCCTGAAATTTTTTTGCAAAATTGTGATAAACTGCAGACCCTTGACCTCTCTTCTAACAACCTGTCAGGGTCTATTTTTGGCCTGAAAATGGATTGCATTTCCTTGTTGCAACTTGATCTATCTGGAAACAACTTGTCAGACTCAATTCCACTCTCTTTGTCAAACTGTACCAGCCTTCAGAGTTTGAATTTAGCTAAGAATATGATTTCTGGGGAAATTCCCAAAGGTTTGGGTCAGCTAAACAAACTACAGACTCTGGATCTTTCCAACAACCAACTCACCGGCTGGATCCCTTCTGAGCTGGGAAATGCATGTGCTTCCCTTTTAGAGGTTAAACTTTCTTTCAACAACATCTCTGGGTCAATCCCATCTGGTTTCTCCTCATGCACTTGGCTGCAACTTCTTGACGTATCTAACAACAACCTGTCAGGACCGTTAGCAGATTCAATCTTTCAGAACCTCGGATCATTGCAAGAACTGCGGCTGGGGAATAATGCTATCAGTGGTCAATTTCCATCTTCATTATCTTCCTGCAAAAAGTTGAGGATTGCGGACTTCAGCTCAAACAAAATTTCTGGATCTATCCCCAGAGATTTGTGTCCAGGGGCAGCCTCACTTGAGGAGCTGAGAATGCCAGATAATCTTATTACAGGTGAGATTCCTGCTGAACTGTCAAAGTGCTCACAGCTGAAGACAATTGATTTTAGTCTGAACTATCTCAATGGTACAATTCCGGAGGAGCTTGGACAACTTGAAAATCTTGAGCAGCTGATAGCATGGTTCAATGGCTTGGAAGGAAAAATTCCATCAAAGCTGGGCCAGTGCAAGAATCTGAAGGATCTCATACTCAATAACAATCATCTCACTGGTGAACTTCCCATTGAGTTATTCAATTGCAGCAATCTTGAATGGATATCACTGACAAGCAATGAGCTTAGTGGTGAAATACCGCGTGAGTTTGGTCTCTTGACAAGGTTAGCAGTTCTGCAGCTTGGAAACAACAGCTTGTCTGGCGAGATACCAGCAGAGCTAGCGAATTGCAGCAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTCACCGGAGAGATCCCTTCAAGACTTGGAAGACAGCTAGGAGCAAAATCCTTGTTTGGGATCCTTTCAGGGAACACTTTGGTGTTTGTAAGAAATGTTGGAAACTCATGCAAAGGAGTAGGAGGTTTGCTAGAATTCTCTGGTATTCGACCTGAAAGACTCTTGCAGGTCCCAACATTGAGGACTTGTGACTTCACAAGACTCTATTCTGGTCCTGTCCTCAGCTATTTCACCAAGTACCAGACTCTGGAGTATCTTGATCTTTCATATAACGAGCTTCGTGGAAAAATCCCGGATGAATTCGGAGACATGGTGGCTTTACAAGTTCTCGAATTATCTCACAATCAGCTCTCTGGAGAAATCCCTTCAACACTTGGCCAGCTAAAAAATTTGGGTGTGTTCGATGCATCACACAACAGATTGCAGGGCCATATTCCAGACTCATTCTCAAACCTCTCGTTCTTGGTTCAAATTGATCTATCGAACAACGAGTTGACAGGGCAAATTCCCTCTAGGGGGCAACTGAGTACACTTCCAGCTTCCCAGTATGCAAATAACCCTGGCCTTTGTGGTGTACCATTACCTGACTGCAAGAGCGACAATAACCAACCCACAACAAATCCAACCGATGATGCTGGTAAAGGTGGCCATAAAACAGCAACTGCAACATGGGCAAACAGCATTGTCATGGGAATTCTCATCTCTGTTGCTTCTGTCTGTATTTTAATTGTGTGGGCAATTGCAATGCGCGCAAGGAGGAAGGAGGCCGAAGAAGTGAAGATGCTCAATAGCTTACAAGCATGCCATGCAGCTACAACATGGAAAATCGACAAAGAGAAAGAGCCACTAAGCATCAACGTTGCAACATTTCAGAGGCAGCTGAGGAAACTCAAATTCTCGCAGCTGATTGAAGCAACTAATGGGTTCTCCGCAGAAAGCCTAATTGGGTGTGGTGGTTTTGGCGAAGTGTTCAAGGCCACACTCAAAGACGGGTCAAGCGTGGCCATAAAGAAGCTGATTCGACTGAGCTGCCAGGGTGATCGAGAATTCATGGCAGAGATGGAAACGTTGGGGAAGATCAAGCACAGAAATCTGGTTCCTCTGTTGGGGTACTGCAAAGTGGGGGAAGAGAGGCTCCTTGTGTATGAATACATGGAGTATGGAAGCCTAGAAGAGATGCTTCATGGGAGAATCAAGACGCGTGATCGGCGCATTTTGACATGGGAAGAAAGGAAAAAGATTGCAAGAGGTGCAGCTAAAGGGCTTTGTTTCCTGCACCACAATTGCATTCCTCACATCATACACAGAGATATGAAGTCAAGCAATGTGCTACTTGACCATGAAATGGAGTCCAGAGTTTCAGATTTTGGAATGGCAAGACTTATAAGTGCCCTTGATACACATCTTAGTGTGAGCACACTTGCAGGAACACCTGGGTATGTTCCACCAGAGTACTACCAAAGCTTCAGGTGCACTGCTAAGGGAGATGTGTACTCATTTGGAGTTGTGATGTTGGAACTGCTTAGTGGAAAACGACCTACTGACAAAGAGGACTTTGGTGACACCAACTTGGTTGGGTGGGCAAAGATGAAGGTCCGTGAAGGGAAGCAAATGGAAGTTATTGACCAAGACTTGCTTTTGGCCACTCAAGGAACTGATGAAGCAGAAGCCAAAGAAGTGAAGGAGATGATAAGATATTTGGAGATTACTTTGCAGTGTGTTGATGACTTGCCTTCAAGAAGGCCAAACATGTTGCAGGTAGTGGCTATGCTGAGAGAGCTTATGCCTGGATCAACTGATGGAAGCAGCAACAGTGCTTGA 3399 0.444 MEKNHVQLLPHLTVTLLVITVLFPVTECAAVSSIKTDAQALLMFKRMIQKDQSGVLSGWKLNKNPCTWYGVSCTHGRVTQLDISGNNDLAGTISLDPLSSMDMLSVLKLSLNSFSVNSTSLLHLPYGLTQLDLSFGGVTGPVPDNLFSKCPNLVVVNLSYNNLTGPIPEIFLQNCDKLQTLDLSSNNLSGSIFGLKMDCISLLQLDLSGNNLSDSIPLSLSNCTSLQSLNLAKNMISGEIPKGLGQLNKLQTLDLSNNQLTGWIPSELGNACASLLEVKLSFNNISGSIPSGFSSCTWLQLLDVSNNNLSGPLADSIFQNLGSLQELRLGNNAISGQFPSSLSSCKKLRIADFSSNKISGSIPRDLCPGAASLEELRMPDNLITGEIPAELSKCSQLKTIDFSLNYLNGTIPEELGQLENLEQLIAWFNGLEGKIPSKLGQCKNLKDLILNNNHLTGELPIELFNCSNLEWISLTSNELSGEIPREFGLLTRLAVLQLGNNSLSGEIPAELANCSSLVWLDLNSNKLTGEIPSRLGRQLGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLLQVPTLRTCDFTRLYSGPVLSYFTKYQTLEYLDLSYNELRGKIPDEFGDMVALQVLELSHNQLSGEIPSTLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPASQYANNPGLCGVPLPDCKSDNNQPTTNPTDDAGKGGHKTATATWANSIVMGILISVASVCILIVWAIAMRARRKEAEEVKMLNSLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKMKVREGKQMEVIDQDLLLATQGTDEAEAKEVKEMIRYLEITLQCVDDLPSRRPNMLQVVAMLRELMPGSTDGSSNSA 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02097 1132 FunFam Leucine-rich repeat receptor protein kinase EMS1 147 242 - -
Viun3g02097 1132 Gene3D Transferase(Phosphotransferase) domain 1 911 1129 - -
Viun3g02097 1132 FunFam serine/threonine-protein kinase BRI1-like 2 36 146 - -
Viun3g02097 1132 CDD STKc_IRAK 841 1120 - -
Viun3g02097 1132 Gene3D - 548 604 - -
Viun3g02097 1132 ProSiteProfiles Leucine-rich repeat profile. 201 222 IPR001611 GO:0005515
Viun3g02097 1132 Gene3D Phosphorylase Kinase; domain 1 795 910 - -
Viun3g02097 1132 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 270 362 - -
Viun3g02097 1132 SUPERFAMILY L domain-like 573 719 - -
Viun3g02097 1132 ProSiteProfiles Protein kinase domain profile. 835 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02097 1132 Pfam Leucine rich repeat 128 188 IPR001611 GO:0005515
Viun3g02097 1132 Pfam Leucine rich repeat 202 260 IPR001611 GO:0005515
Viun3g02097 1132 Pfam Leucine rich repeat 602 643 IPR001611 GO:0005515
Viun3g02097 1132 ProSiteProfiles Leucine-rich repeat profile. 249 270 IPR001611 GO:0005515
Viun3g02097 1132 PRINTS Leucine-rich repeat signature 247 260 - -
Viun3g02097 1132 PRINTS Leucine-rich repeat signature 178 191 - -
Viun3g02097 1132 SUPERFAMILY RNI-like 217 537 - -
Viun3g02097 1132 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 368 554 - -
Viun3g02097 1132 SUPERFAMILY L domain-like 59 270 - -
Viun3g02097 1132 Gene3D Ribonuclease Inhibitor 36 147 IPR032675 -
Viun3g02097 1132 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Viun3g02097 1132 Gene3D Ribonuclease Inhibitor 174 723 IPR032675 -
Viun3g02097 1132 Pfam Protein tyrosine and serine/threonine kinase 838 1117 IPR001245 GO:0004672|GO:0006468
Viun3g02097 1132 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 570 727 - -
Viun3g02097 1132 FunFam serine/threonine-protein kinase BRI1-like 2 911 1128 - -
Viun3g02097 1132 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 405 1119 - -
Viun3g02097 1132 SMART serkin_6 835 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02097 1132 FunFam serine/threonine-protein kinase BRI1-like 2 796 910 - -
Viun3g02097 1132 MobiDBLite consensus disorder prediction 724 743 - -
Viun3g02097 1132 ProSitePatterns Protein kinases ATP-binding region signature. 841 864 IPR017441 GO:0005524
Viun3g02097 1132 MobiDBLite consensus disorder prediction 724 738 - -
Viun3g02097 1132 Pfam Brassinosteroid receptor island domain 545 603 IPR045381 -
Viun3g02097 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 959 971 IPR008271 GO:0004672|GO:0006468
Viun3g02097 1132 SUPERFAMILY Protein kinase-like (PK-like) 816 1117 IPR011009 -
Viun3g02097 1132 SMART LRR_typ_2 321 345 IPR003591 -
Viun3g02097 1132 SMART LRR_typ_2 247 271 IPR003591 -
Viun3g02097 1132 SMART LRR_typ_2 515 538 IPR003591 -
Viun3g02097 1132 SMART LRR_typ_2 442 466 IPR003591 -
Viun3g02097 1132 SMART LRR_typ_2 630 654 IPR003591 -
Viun3g02097 1132 SMART LRR_typ_2 490 514 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02097 Viun-Chr3 17160231 17164072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02097 41 1120 Receptor kinase-like Gene Family AT1G55610 49.643 0.0 1017
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Viun3g02097 PK_Tyr_Ser-Thr 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02097 - - gmx:100789959 2073.13