Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02090 ATGGGCCTTGAATATGGGCCAATGGGTTATGAGTACTGCAGTAAGGGGAAGAGAGTAGATACTTGCGGAAACCCTAGTTGGCCCGCTTCGTTACGTTACACTATCTCTATAAGAACCCAGAGACTGATATTGCAGAACCTGCTTCTGCCGAGCTTATCGAAGAAGAGAGGAGAGGAAGGAGGAGGCATCTTCATTACCAAGATGGTTAAAGGACGCCAAGGAGAACGTGTCAGACTTTATGTCAGGGGCTCAATTCTTGGATACAAGAGGTCCAAGTCAAATCAGTACCCAAATACTTCTCTCATCCAGATTGAGAATGTAAACTCCAAGGAAGAAGTTGCGTGGTACGCTGGGAAGCGTATGGCTTATATTTACAAGGCCAAGGTAAAGAAGAACGGAAGCCACTATCGTTGCATTTGGGGTAAGGTCACCCGACCTCATGGTAACAGTGGTGTCGTTAGAGCTAAGTTCAAGTCTAATCTGCCTCCAAGATCGATGGGAGCAAGGGTTAGAGTGTTTATGTATCCAAGCAATATATGA 540 0.4574 MGLEYGPMGYEYCSKGKRVDTCGNPSWPASLRYTISIRTQRLILQNLLLPSLSKKRGEEGGGIFITKMVKGRQGERVRLYVRGSILGYKRSKSNQYPNTSLIQIENVNSKEEVAWYAGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPRSMGARVRVFMYPSNI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02090 179 Coils Coil 179 179 - -
Viun3g02090 179 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 81 173 IPR001780 GO:0003735|GO:0005840|GO:0006412
Viun3g02090 179 ProSitePatterns Ribosomal protein L35Ae signature. 141 162 IPR018266 GO:0003735|GO:0005840|GO:0006412
Viun3g02090 179 Pfam Ribosomal protein L35Ae 79 173 IPR001780 GO:0003735|GO:0005840|GO:0006412
Viun3g02090 179 Gene3D translation elongation factor selb, chain A, domain 4 73 179 IPR038661 -
Viun3g02090 179 SUPERFAMILY Translation proteins 79 173 IPR009000 -
Viun3g02090 179 PANTHER 60S RIBOSOMAL PROTEIN L35A 69 179 IPR001780 GO:0003735|GO:0005840|GO:0006412
Viun3g02090 179 FunFam 60S ribosomal protein L35a 74 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02090 Viun-Chr3 16956974 16959763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02090 68 179 Cytoplasmic Ribosomal Protein Gene Family AT1G07070 89.286 2.02e-72 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02090 K02917 - gmx:100499746 228.409