Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02087 ATGTCTTCGGCTGCTCCGAGTTCCCTGTTGAAGGTGGAGGAAATACAAAGAAGAGGGAGGGGAATGGTTGCATCTCAGCCTCTTAAAGCTGGTCAAATTGTCCTAAAAGACTCCCCCATTCTGCTGTATTCAGCTTTGCCCTTGATCAGACAGTCTTTGTCATCGTCATCCTCTGCCTCAACTTCATGTTTCTGTGATCACTGCTTCAAAACCTTGCCTCCATTTTTACAGGGAGATTCTTCGTCATCCACAGTTTTGTGCCCCAATTGTCGCTACCATCGATTCTGTAGCTCAAGTTGTCTTTCAAAGGCATTGAACTCCTCACATTCTTCTTGGGTATGTCAAGCGTTATCTAGTCTCAGAGGCAACTCTCTACTGCTTGAACAGCCACTTGAGCGCCAAGTCCAGGCTAATTTTCTCATAGCTGCCTACAATGTTGCCAATATCTCCCCTTCAGACTTCCAAATTTTGCTTTCTCTCCAGGGTTCGCCTGATGATACCACCATTGCCGCAGCCAAGTTCCTACACCCCCTTATTTCATCTCTCTGCTCACTTTCCCTCATTAGTCCCCAGAATGGATTTTCTTTAGAACTCACCTCTGCACTTCTTGTCAAGGACAAGCTCAATGCCTTTGGAATAATGCAGCCCTTCTCTGCAGATGATGACCAGAGGTCTGTCAGAGCCTATGGTATTTACCCCTATGCTTCCTTTTTTAACCATGACTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGACAGCAATCCACATGAAGGCAGCCATAATACTGACTTTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGGGAGATTTGTTTGAGCTATTTCCCTGTGAATGAAAACTATTCTGGTAGGCAAAAGAGATTGATTGAAGACTATGGCTTCTCCTGTAATTGTGATCGATGTAATGTGGAGTCAAATTGGTCAGACAATGATAGTGTTGAAGATAATGCTGAGGATGAAGAGGAGGTTATGGATGAGGACCAATATGAAGTTATGGCAGCATCAGACAATGACAAACATGCTCTTGAAGATAATAATGATTTTCCACATGCATATTTCTTTTTAAAATACATGTGTGATAGAACGAATTGCTGGGGAACATTAGCTCCATTACCTCCGCAGGGCGATACTCCATCTAATGTCATGGAATGCAATGTCTGTGGCAAATTGAAGAGTGACGATGATGCTGATGAAGGTCTTATGGAGGACTAA 1239 0.4342 MSSAAPSSLLKVEEIQRRGRGMVASQPLKAGQIVLKDSPILLYSALPLIRQSLSSSSSASTSCFCDHCFKTLPPFLQGDSSSSTVLCPNCRYHRFCSSSCLSKALNSSHSSWVCQALSSLRGNSLLLEQPLERQVQANFLIAAYNVANISPSDFQILLSLQGSPDDTTIAAAKFLHPLISSLCSLSLISPQNGFSLELTSALLVKDKLNAFGIMQPFSADDDQRSVRAYGIYPYASFFNHDCLPNACRFDYVDSNPHEGSHNTDFIIRMIHDVPQGREICLSYFPVNENYSGRQKRLIEDYGFSCNCDRCNVESNWSDNDSVEDNAEDEEEVMDEDQYEVMAASDNDKHALEDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPQGDTPSNVMECNVCGKLKSDDDADEGLMED 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02087 412 Pfam SET domain 19 283 IPR001214 GO:0005515
Viun3g02087 412 SUPERFAMILY SET domain 10 311 IPR046341 -
Viun3g02087 412 CDD SET_SMYD 208 310 - -
Viun3g02087 412 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 1 407 IPR044238 -
Viun3g02087 412 Gene3D - 64 123 - -
Viun3g02087 412 SMART set_7 8 290 IPR001214 GO:0005515
Viun3g02087 412 Gene3D SET domain 21 310 IPR046341 -
Viun3g02087 412 ProSiteProfiles SET domain profile. 8 284 IPR001214 GO:0005515
Viun3g02087 412 Gene3D - 128 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02087 Viun-Chr3 16892646 16895985 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun3g02087 SET 9.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02087 - - gmx:100783406 713.761