Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02061 ATGCTTTTTGCAAATCCGAAAGAGCAAGTATTGGTTATGAAGAACGGAAATGAATGCGAGTACCGCCATAGTGAGTATGCACGCGTTAATCCTAGGGATTGTCGTTATTGGTTGAGTGGCAATTGTTTGAATCCCAAATGTTCATTTCGTCATCCGCCTCTTGATGGCTTGTTAGGAACTCAGGCAGCAACAGCTGGTGGACCATCGGTATCTGCACCCCCATCACAGATTCCAACAGCATCTGCAACACATTCACCTTATAATTCCACTAAACAAGCTGTCCCTTGCTTTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGGTGTGCCTTTATGCATGGACCTCCTGCTCCTAGCACTGGTAATAAAGTAGCTGCTCAGGTTCCAGTTACCAGCCAAGGAGCCGAGAATCCAGGTTTTAAGAAGCCTTTTGGAACCAATGAAAAGTATACTCAGGAAAGGAAAACTTCCCAAGGAAATGTTGCAAAGTCAGGTGGTGGACCTGAACCTAAACCTGCCCCAAAAATTGAATCTGCTCCTAAAAGAAATATGTTTGAATTGGAGAAGGAAATGGTACCACCCTCTGTAGGATTTGATAGTGAGGCTTCTAGATTTAAGACCAGTTCTCCACCAGTAACCAATGGCCCTACTGTAGTCCGGTCAAACCGTCTGCATCAAGCTCGCGTGCCAGATGATCACAATTTCCACAGTGGTAAGGACAGTGACGAATTTCTCAGAGAATCGTCTCCTGGGTTTGATGTCCTCGTAGCTGATGAACTTAGGAATTCTGATTACTACCATGGGGAAGACGAATTTGGTAAAGCAAGAGGTCCAGATGAAAGGAACTTAGACTCTTTGAATGAATATGATTTAGGGCATTCTGGTGAATATGGTTTAGCAGCTGATATTGATCGGGAAAGATTTCGTGTGTCCCAAGGTTATGAGTCATATGATCACATGCAGGAACCATATGTTTGGGAGCAGCACAGGAAGGCTTCAGCCCATTTAGACAGAAGGACTCGCCGCAGATCTGGCAGTCCTGAAAATGCTGAGGTCTCAGATCTCCGACATCAATTATCCAAGCGCAGAAAGGGCAATGGTTTGAAATCTGTTGTCAGTCATGATTATGCCCTTGAGGGTCATGGTGAAGAACAAAGTCATCGATCTTTCTCTAGGAAGGACTCACTCCAGTTACCTCTGAATGAGAGCTCCCTCGGTAATCGCTTCCGTGGCAGAATAAAACTTCCAACAAATGGTGGTGCTGATCAGCTAGAGAGGGATGACAGAGGGAGAGTTAGAGGCAGGTTGTTGTCTGGAAGGTTGCAAGCCACTCAGCAGGGAAGGGTCCATGATAGAATGCGAGGAAGGTTGCAAGATGATGAGAGGAGAAACTCGAAGGAACGAATAATGGGGAGAGAAGTGATAGGTGGTGGTAGGAGTGATTTTGCTGGGCCAAAAAGTCTGGCAGAGCTTAAAAATGGGAGGAACCCTGAAAATAGGGAGCCACAACCCCTGCGAAGGAGAGGAACTTTAAGAGATGATCACCCACAATCTGAAGATGATCTTCAGTTTGATGGTCCAAAGCCTCTCAGTGAAATTTTGAAGGAGAAGAAAAGAGGAGGAGCTGGAGGCAGAGGTGATGCAGACTCGGGCAATGGCAAGTCATCTGGTATTAAAAATGAAAAAGTTATCAATGGCTCAGATCCTACCCCAGTCACTAACACACAAAACGGTGTGCTGTCTGAGACCAAGGAATACGTCAACAATCAAAATAACGAAGAGTCCAAGGTTGAGATCACTGATGCAGTTGGAGGAGAGACTGATGCAACTGATGGTCAATACGAGGAGGGAATGTACGATGAAGCTGGTGAAGATCAGTATTACGAAGGTGATGATCAGAGAGAAGGAGATTATGAGTATGAACAAGGTGATGAGGGTTACTACGAGTATGAACAAGGTGAAGAGGGTGAAAATCAGGAGGAAGAGTACATTGAAGAAGAAGATGGAGATGATTTTGCTAAGAAGATTGGTGTCATTCATTCATAA 2049 0.4495 MLFANPKEQVLVMKNGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCSFRHPPLDGLLGTQAATAGGPSVSAPPSQIPTASATHSPYNSTKQAVPCFFFQKGLCLKGDRCAFMHGPPAPSTGNKVAAQVPVTSQGAENPGFKKPFGTNEKYTQERKTSQGNVAKSGGGPEPKPAPKIESAPKRNMFELEKEMVPPSVGFDSEASRFKTSSPPVTNGPTVVRSNRLHQARVPDDHNFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGPDERNLDSLNEYDLGHSGEYGLAADIDRERFRVSQGYESYDHMQEPYVWEQHRKASAHLDRRTRRRSGSPENAEVSDLRHQLSKRRKGNGLKSVVSHDYALEGHGEEQSHRSFSRKDSLQLPLNESSLGNRFRGRIKLPTNGGADQLERDDRGRVRGRLLSGRLQATQQGRVHDRMRGRLQDDERRNSKERIMGREVIGGGRSDFAGPKSLAELKNGRNPENREPQPLRRRGTLRDDHPQSEDDLQFDGPKPLSEILKEKKRGGAGGRGDADSGNGKSSGIKNEKVINGSDPTPVTNTQNGVLSETKEYVNNQNNEESKVEITDAVGGETDATDGQYEEGMYDEAGEDQYYEGDDQREGDYEYEQGDEGYYEYEQGEEGENQEEEYIEEEDGDDFAKKIGVIHS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02061 682 ProSiteProfiles Zinc finger C3H1-type profile. 90 117 IPR000571 GO:0046872
Viun3g02061 682 MobiDBLite consensus disorder prediction 448 475 - -
Viun3g02061 682 MobiDBLite consensus disorder prediction 614 639 - -
Viun3g02061 682 MobiDBLite consensus disorder prediction 377 392 - -
Viun3g02061 682 SUPERFAMILY CCCH zinc finger 91 115 IPR036855 GO:0046872
Viun3g02061 682 ProSiteProfiles Zinc finger C3H1-type profile. 28 54 IPR000571 GO:0046872
Viun3g02061 682 MobiDBLite consensus disorder prediction 133 179 - -
Viun3g02061 682 MobiDBLite consensus disorder prediction 202 219 - -
Viun3g02061 682 MobiDBLite consensus disorder prediction 61 84 - -
Viun3g02061 682 SMART c3hfinal6 30 53 IPR000571 GO:0046872
Viun3g02061 682 SMART c3hfinal6 90 116 IPR000571 GO:0046872
Viun3g02061 682 MobiDBLite consensus disorder prediction 336 362 - -
Viun3g02061 682 MobiDBLite consensus disorder prediction 64 84 - -
Viun3g02061 682 MobiDBLite consensus disorder prediction 196 219 - -
Viun3g02061 682 MobiDBLite consensus disorder prediction 494 545 - -
Viun3g02061 682 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 14 680 - -
Viun3g02061 682 MobiDBLite consensus disorder prediction 554 598 - -
Viun3g02061 682 Pfam RNA-binding, Nab2-type zinc finger 95 115 - -
Viun3g02061 682 Pfam RNA-binding, Nab2-type zinc finger 33 52 - -
Viun3g02061 682 Gene3D - 14 58 - -
Viun3g02061 682 Gene3D - 85 161 - -
Viun3g02061 682 MobiDBLite consensus disorder prediction 422 436 - -
Viun3g02061 682 MobiDBLite consensus disorder prediction 336 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02061 Viun-Chr3 16598699 16602275 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun3g02061 zf-CCCH_2 0.02 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02061 - - gmx:102669253 1021.15