Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02060 ATGGTTACCCCACAGCCACAGCTTCAGGTTCAGCCTCAACAGCCCGCACCCTCTTCGCAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGCGAGTACCGCCATAGTGAGTATGCACGCGTTAATCCTAGGGATTGTCGTTATTGGTTGAGTGGCAATTGTTTGAATCCCAAATGTTCATTTCGTCATCCGCCTCTTGATGGCTTGTTAGGAACTCAGGCAGCAACAGCTGGTGGACCATCGGTATCTGCACCCCCATCACAGATTCCAACAGCATCTGCAACACATTCACCTTATAATTCCACTAAACAAGCTGTCCCTTGCTTTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGGTGTGCCTTTATGCATGGACCTCCTGCTCCTAGCACTGGTAATAAAGTAGCTGCTCAGGTTCCAGTTACCAGCCAAGGAGCCGAGAATCCAGGTTTTAAGAAGCCTTTTGGAACCAATGAAAAGTATACTCAGGAAAGGAAAACTTCCCAAGGAAATGTTGCAAAGTCAGGTGGTGGACCTGAACCTAAACCTGCCCCAAAAATTGAATCTGCTCCTAAAAGAAATATGTTTGAATTGGAGAAGGAAATGGTACCACCCTCTGTAGGATTTGATAGTGAGGCTTCTAGATTTAAGACCAGTTCTCCACCAGTAACCAATGGCCCTACTGTAGTCCGGTCAAACCGTCTGCATCAAGCTCGCGTGCCAGATGATCACAATTTCCACAGTGGTAAGGACAGTGACGAATTTCTCAGAGAATCGTCTCCTGGGTTTGATGTCCTCGTAGCTGATGAACTTAGGAATTCTGATTACTACCATGGGGAAGACGAATTTGGTAAAGCAAGAGGTCCAGATGAAAGGAACTTAGACTCTTTGAATGAATATGATTTAGGGCATTCTGGTGAATATGGTTTAGCAGCTGATATTGATCGGGAAAGATTTCGTGTGTCCCAAGGTTATGAGTCATATGATCACATGCAGGAACCATATGTTTGGGAGCAGCACAGGAAGGCTTCAGCCCATTTAGACAGAAGGACTCGCCGCAGATCTGGCAGTCCTGAAAATGCTGAGGTCTCAGATCTCCGACATCAATTATCCAAGCGCAGAAAGGGCAATGGTTTGAAATCTGTTGTCAGTCATGATTATGCCCTTGAGGGTCATGGTGAAGAACAAAGTCATCGATCTTTCTCTAGGAAGGACTCACTCCAGTTACCTCTGAATGAGAGCTCCCTCGGTAATCGCTTCCGTGGCAGAATAAAACTTCCAACAAATGGTGGTGCTGATCAGCTAGAGAGGGATGACAGAGGGAGAGTTAGAGGCAGGTTGTTGTCTGGAAGGTTGCAAGCCACTCAGCAGGGAAGGGTCCATGATAGAATGCGAGGAAGGTTGCAAGATGATGAGAGGAGAAACTCGAAGGAACGAATAATGGGGAGAGAAGTGATAGGTGGTGGTAGGAGTGATTTTGCTGGGCCAAAAAGTCTGGCAGAGCTTAAAAATGGGAGGAACCCTGAAAATAGGGAGCCACAACCCCTGCGAAGGAGAGGAACTTTAAGAGATGATCACCCACAATCTGAAGATGATCTTCAGTTTGATGGTCCAAAGCCTCTCAGTGAAATTTTGAAGGAGAAGAAAAGAGGAGGAGCTGGAGGCAGAGGTGATGCAGACTCGGGCAATGGCAAGTCATCTGGTATTAAAAATGAAAAAGTTATCAATGGCTCAGATCCTACCCCAGTCACTAACACACAAAACGGTGTGCTGTCTGAGACCAAGGAATACGTCAACAATCAAAATAACGAAGAGTCCAAGGTTGAGATCACTGATGCAGTTGGAGGAGAGACTGATGCAACTGATGGTCAATACGAGGAGGGAATGTACGATGAAGCTGGTGAAGATCAGTATTACGAAGGTGATGATCAGAGAGAAGGAGATTATGAGTATGAACAAGGTGATGAGGGTTACTACGAGTATGAACAAGGTGAAGAGGGTGAAAATCAGGAGGAAGAGTACATTGAAGAAGAAGATGGAGATGATTTTGCTAAGAAGATTGGTGTCATTCATTCATAA 2130 0.4554 MVTPQPQLQVQPQQPAPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCSFRHPPLDGLLGTQAATAGGPSVSAPPSQIPTASATHSPYNSTKQAVPCFFFQKGLCLKGDRCAFMHGPPAPSTGNKVAAQVPVTSQGAENPGFKKPFGTNEKYTQERKTSQGNVAKSGGGPEPKPAPKIESAPKRNMFELEKEMVPPSVGFDSEASRFKTSSPPVTNGPTVVRSNRLHQARVPDDHNFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGPDERNLDSLNEYDLGHSGEYGLAADIDRERFRVSQGYESYDHMQEPYVWEQHRKASAHLDRRTRRRSGSPENAEVSDLRHQLSKRRKGNGLKSVVSHDYALEGHGEEQSHRSFSRKDSLQLPLNESSLGNRFRGRIKLPTNGGADQLERDDRGRVRGRLLSGRLQATQQGRVHDRMRGRLQDDERRNSKERIMGREVIGGGRSDFAGPKSLAELKNGRNPENREPQPLRRRGTLRDDHPQSEDDLQFDGPKPLSEILKEKKRGGAGGRGDADSGNGKSSGIKNEKVINGSDPTPVTNTQNGVLSETKEYVNNQNNEESKVEITDAVGGETDATDGQYEEGMYDEAGEDQYYEGDDQREGDYEYEQGDEGYYEYEQGEEGENQEEEYIEEEDGDDFAKKIGVIHS 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02060 709 Pfam RNA-binding, Nab2-type zinc finger 122 142 - -
Viun3g02060 709 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Viun3g02060 709 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Viun3g02060 709 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Viun3g02060 709 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Viun3g02060 709 MobiDBLite consensus disorder prediction 253 274 - -
Viun3g02060 709 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 21 707 - -
Viun3g02060 709 MobiDBLite consensus disorder prediction 581 611 - -
Viun3g02060 709 SUPERFAMILY CCCH zinc finger 118 142 IPR036855 GO:0046872
Viun3g02060 709 Gene3D - 112 188 - -
Viun3g02060 709 Pfam Zinc-finger containing family 25 80 IPR041686 -
Viun3g02060 709 MobiDBLite consensus disorder prediction 449 463 - -
Viun3g02060 709 MobiDBLite consensus disorder prediction 295 316 - -
Viun3g02060 709 MobiDBLite consensus disorder prediction 223 274 - -
Viun3g02060 709 FunFam Zinc finger CCCH domain-containing protein 17 18 81 - -
Viun3g02060 709 MobiDBLite consensus disorder prediction 229 249 - -
Viun3g02060 709 Gene3D - 16 81 - -
Viun3g02060 709 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g02060 709 MobiDBLite consensus disorder prediction 363 389 - -
Viun3g02060 709 MobiDBLite consensus disorder prediction 629 666 - -
Viun3g02060 709 MobiDBLite consensus disorder prediction 295 315 - -
Viun3g02060 709 MobiDBLite consensus disorder prediction 641 666 - -
Viun3g02060 709 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Viun3g02060 709 MobiDBLite consensus disorder prediction 160 206 - -
Viun3g02060 709 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Viun3g02060 709 MobiDBLite consensus disorder prediction 404 419 - -
Viun3g02060 709 MobiDBLite consensus disorder prediction 521 572 - -
Viun3g02060 709 MobiDBLite consensus disorder prediction 363 611 - -
Viun3g02060 709 MobiDBLite consensus disorder prediction 92 111 - -
Viun3g02060 709 MobiDBLite consensus disorder prediction 475 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02060 Viun-Chr3 16598285 16602275 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun3g02060 zf-CCCH_3 4.6e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02060 - - gmx:102669253 1072.77