Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02041 ATGATGTTTTCGACACTCGTGGTTGTGTTGCTTTTGTGTTTTTCTCCTACGCTAGTGGTCTTTGGTCTGAGCAACTCGGATCACACCACTTTGAGAGTGCTGTTGGAAGTGAAGAAGTCTTTTGTGAAAGACCCGCGAAATGTTCTGAGTGATTGGACAGAGGATAACATTGACTACTGCAGTTGGAGAGGGGTGTCGTGTGAATTGGACTCAGACTTGGACACAGTTTCAAACTCTTTAGATGGTGACTCCATGCAAGTTGTGGGTCTCAATCTTTCTGACTCGTCACTTACCGGGTCACTGTCACCTTCACTCGGTCGTTTGCAAAACCTGCTCCACCTTGATCTTTCCTCCAACAGTCTCACTGGTCCCATTCCACCTAATCTCTCCAACCTCACTTCCTTGGAATCTTTGCTTCTCTTCTCCAACCAACTCACCGGTCACATACCGGAAGAGTTCGGCTCGCTCAAGAGTCTCCGAGTCATGCGACTCGGTGACAATGCATTGACGGGAACGATTCCGGCATCTCTCGCCAACCTGGTCAATTTGGTCAACCTTGGCTTGGCTTCCTGCGGACTCACCGGCTCTATTCCGAGGCAACTTGGTCAACTCAAACTCATGGAGAATCTGATTCTGCAAGACAACGAGTTGATGGGTCCTATTCCGACCGAGTTGGGGAACTGCTCAAGCCTCGCCGTCTTCACTGCAGCTAACAACAAACTCAATGGATCAATACCCAGTGAACTGGGTCGGCTCAGCAATCTGCAAATTCTCAACTTTGCCAACAACAGTATATCAGGGGAGATTCCGAGTCAACTCGGTAATATGAGTCAACTCGTTTACCTGAACTTGATGGGGAACCAGCTCGAGGGTACCATTCCTCCGTCACTAGCTCAACTGGGCAATCTGCAAAATCTGGACCTGTCAATGAACAAGCTCAGGGGAGGAATCCCAGAGGAGTTGGGCAACTTGGGTGAGCTAGTTTATTTGGTTCTGTCTGGTAACAACCTTAATGGTGTCATACCGAGGACCATATGTTCCAATGCAACAAGTTTGGAGCACTTGATGTTGTCAGAAAGTGGACTCCATGGTGAGATTCCAGCTGAGTTGAGTCAATGCCAGCAACTAATGCAACTTGATTTATCCAACAATGCACTCAACGGATCCATACCTCTTGAGCTTTATGGGTTGCTGCAATTAACTGATCTCTTGCTGCACAATAACAGCTTGGTTGGCTCCATCTCTCCCTTCATAGGGAACCTCAGTGGCTTGCAGACACTTGCTTTGTTTCACAATAATTTGGAGGGTGTTCTGCCGAGAGAGATAGGAATGCTTGGCAAGTTGGAAATTTTGTATCTTTATGATAACCAATTGTCAGGGTCTATACCTACGGAGATTGGTAATTGTTCTAGCTTGCAAATGATTGATTTCTTTGGAAACCGTTTCAGTGGGGAAATTCCAGTCACTATTGGAAGGCTGAAAGTGTTGAATTTCCTTCACCTTAGACAGAATGAGCTAGTGGGTGAGATTCCAGCCACCTTGGGTAATTGTCATAAACTGAACATTCTGGATTTAGCTGACAATCAGCTCTCGGGTGCAATTCCTGCAACGTTTGGATTCCTCAAGGAATTACAGCAACTCATGATCTACAACAATTCCCTTGAAGGTAATCTTCCTCACCAACTGATAACATTAACAAACTTGACCAGAGTGAATCTTTCTAAGAACAGATTGAATGGTAGTGTAGCTGCATTGTGTAGCTCTCAGTCATTTCTTTCTTTCGATGTTACTGACAATGAGTTTGAGGGTGAAATTCCTTCCCAAATGGGAAACTCACCCTCCCTTGAGAGACTAAGATTAGGTAACAACAATTTTTCTGGAGAAATTCCAAGGACATTGGGAAAAATCCGTGAGCTGTCATTATTAGACCTCTCAGGAAATTCACTCACTGGACCAATACCAGCTGAGCTTTCTTTGTGCAACAAACTGGCTTATATTGATTTAAGCAGTAACTTTATTTTCGGACAAATACCATTATGGCTTGGAAGTTTATCTCAGTTGGGAGAGCTCAAACTCTCCTCCAATAATTTTTCTGGGCCACTTCCATTAGGCCTATTCAAATGTTCTAAGTTGCTTGTTCTCTCTCTAAATGACAACTCCCTGAATGGAACTCTCCCATCTGATATTGGTGAACTTGCAAACCTAAATGTGCTCAGACTTGACCACAATAATTTATCTGGTCCAATACCTCTGGAGATAGGCAAATTGACCAAGCTTTATGAGCTCCGGCTCTCAAGAAATGGATTCAATGGTGAGATTCCAGCTGAGTTTGGAAAACTTCAAAATCTCCAAATCATTTTGGACCTTAGTTACAATAATCTCTCAGGTCTCATCCCACTTTCTCTTGGGAAGCAGTCAAAGTTAGAAGCTCTTGATCTTTCCCACAATCAACTAACTGGAGAAGTCCCTCCACAAATTGGGGAAATGAGCAGTTTGGGAAAGCTTGATCTTTCTTACAACAACCTTCAAGGAAAATTGGATAAGCATTTTTCCCGTTGGCCAGACCAGGCATTTGAAGGAAACATACATCTTTGTGGAAGCCCTCTTGAGAGCTGCCACAGAAATAAAGACTCTGAAAATGCAGGCCTGAATGAAGCAACAGTAGTGATAATCTCTTCCCTTTCAACATTAGCTGCAATTGCACTTCTGATACTCGCAGTCAGAATCTTTTCCAAAAACAAGCAAGAATTCTGCAGGAAAGCCAGTGAAGTGAACTATGTTTACTCCTCTTCTTCATCACAAGCACAGAGAAGACCACTGTTCCAACTAAATGCAGCTGGAAATAGAGATTTCAGATGGGAAGACATCATGGATGCAACGAACAATCTAAGTGAGGACTTCATGATTGGCTCAGGAGGTTCAGGGAAAATCTACAAAGCTGAATTGGCATCTGGAGAGACTGTTGCTGTCAAGAAGATTTCATCAAAAGATGAATTTCTGTTAAACAAAAGCTTCGTAAGAGAAGTTAAGACACTAGGGAGGATTAGACACAGACATCTGGTGAAGCTAATAGGATATTGTAGCAACAAAAACAAAGAAGCAGGTTGGAATCTGTTGATATATGAGTACATGGAGAATGGGAGTGTTTGGGATTGGCTTCACGGGAAACCAGCGAAGGAGAGCAAAGTAAAGAGCACCCTTGATTGGGAGACAAGGTTCAAAATTGCTGTAGGATTAGCTCAAGGAGTTGAATACCTGCATCACGATTGCGTCCCAAAGATCCTTCACAGGGACATCAAATCCAGCAATGTATTGCTAGACTCAAAATTGGAGGCACACTTGGGAGATTTTGGACTGGCAAAAGCACTAACAGAGAATTATGACTCTGATACTGAGTCTAATTCTTGGTTTGCTGGCTCTTATGGCTACCTAGCTCCAGAGTATGCATACTCACAACAGGCAACAGAAAAGAGTGACGTTTACAGCATGGGAATAGTGCTGATGGAACTTGTTAGTGGTAAAATGCCAACAAATGAAATTTTTGGTGCTGAGATGAACATGGTGAGATGGGTAGAAATGAACGTGGATATGCGTGGCTTTACCAGTGAGGAACTGATAGATCCTGAATTGAAACCCCTTTTACCTGACGAAGAGTTTGCTGCATTCAAAGTGCTTGAGATAGCCCTGCAATGCACGAAAGCTACACCACACGAGAGGCCATCTTCGAGGAAAGCATGCGATCTTCTCCTCCATGTATTCAACAACAGGATGATCAACTTTGAGAAGATGAATTTGGAACATTGCAAATGA 3810 0.4354 MMFSTLVVVLLLCFSPTLVVFGLSNSDHTTLRVLLEVKKSFVKDPRNVLSDWTEDNIDYCSWRGVSCELDSDLDTVSNSLDGDSMQVVGLNLSDSSLTGSLSPSLGRLQNLLHLDLSSNSLTGPIPPNLSNLTSLESLLLFSNQLTGHIPEEFGSLKSLRVMRLGDNALTGTIPASLANLVNLVNLGLASCGLTGSIPRQLGQLKLMENLILQDNELMGPIPTELGNCSSLAVFTAANNKLNGSIPSELGRLSNLQILNFANNSISGEIPSQLGNMSQLVYLNLMGNQLEGTIPPSLAQLGNLQNLDLSMNKLRGGIPEELGNLGELVYLVLSGNNLNGVIPRTICSNATSLEHLMLSESGLHGEIPAELSQCQQLMQLDLSNNALNGSIPLELYGLLQLTDLLLHNNSLVGSISPFIGNLSGLQTLALFHNNLEGVLPREIGMLGKLEILYLYDNQLSGSIPTEIGNCSSLQMIDFFGNRFSGEIPVTIGRLKVLNFLHLRQNELVGEIPATLGNCHKLNILDLADNQLSGAIPATFGFLKELQQLMIYNNSLEGNLPHQLITLTNLTRVNLSKNRLNGSVAALCSSQSFLSFDVTDNEFEGEIPSQMGNSPSLERLRLGNNNFSGEIPRTLGKIRELSLLDLSGNSLTGPIPAELSLCNKLAYIDLSSNFIFGQIPLWLGSLSQLGELKLSSNNFSGPLPLGLFKCSKLLVLSLNDNSLNGTLPSDIGELANLNVLRLDHNNLSGPIPLEIGKLTKLYELRLSRNGFNGEIPAEFGKLQNLQIILDLSYNNLSGLIPLSLGKQSKLEALDLSHNQLTGEVPPQIGEMSSLGKLDLSYNNLQGKLDKHFSRWPDQAFEGNIHLCGSPLESCHRNKDSENAGLNEATVVIISSLSTLAAIALLILAVRIFSKNKQEFCRKASEVNYVYSSSSSQAQRRPLFQLNAAGNRDFRWEDIMDATNNLSEDFMIGSGGSGKIYKAELASGETVAVKKISSKDEFLLNKSFVREVKTLGRIRHRHLVKLIGYCSNKNKEAGWNLLIYEYMENGSVWDWLHGKPAKESKVKSTLDWETRFKIAVGLAQGVEYLHHDCVPKILHRDIKSSNVLLDSKLEAHLGDFGLAKALTENYDSDTESNSWFAGSYGYLAPEYAYSQQATEKSDVYSMGIVLMELVSGKMPTNEIFGAEMNMVRWVEMNVDMRGFTSEELIDPELKPLLPDEEFAAFKVLEIALQCTKATPHERPSSRKACDLLLHVFNNRMINFEKMNLEHCK 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02041 1269 Gene3D Ribonuclease Inhibitor 29 201 IPR032675 -
Viun3g02041 1269 Gene3D Phosphorylase Kinase; domain 1 923 1043 - -
Viun3g02041 1269 Pfam Leucine rich repeat N-terminal domain 32 67 IPR013210 -
Viun3g02041 1269 FunFam Leucine-rich repeat receptor-like protein kinase 1044 1266 - -
Viun3g02041 1269 Pfam Leucine rich repeat 519 578 IPR001611 GO:0005515
Viun3g02041 1269 Pfam Leucine rich repeat 758 818 IPR001611 GO:0005515
Viun3g02041 1269 SMART LRR_typ_2 493 517 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 156 180 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 445 469 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 636 660 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 780 804 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 132 155 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 829 860 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 252 276 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 108 131 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 300 323 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 565 588 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 732 756 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 421 444 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 684 708 IPR003591 -
Viun3g02041 1269 SMART LRR_typ_2 324 348 IPR003591 -
Viun3g02041 1269 Gene3D Ribonuclease Inhibitor 586 881 IPR032675 -
Viun3g02041 1269 SUPERFAMILY Protein kinase-like (PK-like) 946 1249 IPR011009 -
Viun3g02041 1269 Gene3D Transferase(Phosphotransferase) domain 1 1044 1266 - -
Viun3g02041 1269 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 487 583 - -
Viun3g02041 1269 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 293 392 - -
Viun3g02041 1269 SMART serkin_6 963 1254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02041 1269 PRINTS Leucine-rich repeat signature 829 842 - -
Viun3g02041 1269 PRINTS Leucine-rich repeat signature 808 821 - -
Viun3g02041 1269 ProSiteProfiles Protein kinase domain profile. 963 1254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02041 1269 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 584 876 - -
Viun3g02041 1269 SUPERFAMILY L domain-like 346 672 - -
Viun3g02041 1269 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 924 1043 - -
Viun3g02041 1269 Gene3D Ribonuclease Inhibitor 282 390 IPR032675 -
Viun3g02041 1269 SUPERFAMILY RNI-like 592 844 - -
Viun3g02041 1269 ProSitePatterns Protein kinases ATP-binding region signature. 969 992 IPR017441 GO:0005524
Viun3g02041 1269 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 206 277 - -
Viun3g02041 1269 Gene3D Ribonuclease Inhibitor 205 279 IPR032675 -
Viun3g02041 1269 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 490 1249 - -
Viun3g02041 1269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1094 1106 IPR008271 GO:0004672|GO:0006468
Viun3g02041 1269 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 201 - -
Viun3g02041 1269 FunFam Uncharacterized protein 393 486 - -
Viun3g02041 1269 Gene3D Ribonuclease Inhibitor 488 585 IPR032675 -
Viun3g02041 1269 Gene3D Ribonuclease Inhibitor 391 487 IPR032675 -
Viun3g02041 1269 Pfam Protein kinase domain 968 1246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02041 1269 Pfam Leucine Rich Repeat 110 132 IPR001611 GO:0005515
Viun3g02041 1269 SUPERFAMILY L domain-like 35 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02041 Viun-Chr3 16379086 16383891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02041 33 709 Receptor kinase-like Gene Family AT1G17750 36.164 3.27e-102 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun3g02041 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02041 - - gmx:100801889 2087.38