Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02032 ATGCATGAGCAAACTGGTTGCTTTGATCCCAACACAATGGGAGAAAACATACCCTCTCTAAAGGATAACTTTCCTCAAACACTTGGAGACCCTCTAACTCCATCATCACCTATGGTTGTAGATAACACCACAAACACTGATAATGGCCTTGAAGAAAATCTCAGGCTTTCTGTGGAGGAACTCTCCTTTAACCATCACAACCTGCAACACCAAGATGGAGTCACTGCCACATCTACTCATTCACAACAACATCTAGGTTTGAACATGGATAACCATTTGGTGCAACAGGTCATTGATGTTCTTCCCTATCAGCAATCCACTTGGGACCCTTCTACTGTTCAGGAATTGCCAGACATAGCTTATGCTAATCAAATAGAACAGCAACAAAATGAACAACAATTTCAGCAAATGGAGACCCAAAGCTTCAACCCCTCTTCCATACTAGACCCTCCTTACCCTTCACCAGATCTCCTGAACCTTATCCACTTACCAAGATGCTCAGCCCCATCTCTGCACACCAATCCCACCATTTGCCTCACAAACCCAACACAGAACACACCAAACTTTCAGAATCCACTGGCCTTTATTGCAGATCTTCCAATAGGGTCAGACAACAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTATTCCATCTGAACCTTCCTCCACAGCCTCCAGCCCTCAGAGAGCTGTTTCAGTCTCTCCCCCGTGGCTACAGCTTGCCAACCAACTCAAGGAATGGTTCACTCTTTGGAGGGGATGAGATTGAGGGAGATGGGAGCCAGCTTGACATGGGAGTGCTGGAATTCAACAGGGTCACTCCCACTGTTGCCAAAGGAAGAGGAGGAAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAACTCAATGGAAAATACAAAATCTTGAGAAATCTTATACCAAACCCCACCAAGATTGATAGAGCCTCCGTGGTGGGGGATGCCATTGACTACATAAGAGAGCTGATTAGAACAGTGAATGAACTGAAACTATTGGTAGAGAAGAAAAGGTATGGGAGAGAGAGGTGCAAAAGGCCTAAAACAGAAGAAGATGGTGCTGAGAGCTGTAACATAAAGCCTTTTGGTGACCCAGATGGGGGCATAAGGACATCATGGCTCCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTATAGACGATGATGTCACAATCAAACTGTTCCAGAGGAAGAAAATCAACTGCCTGTTGTTTGTTTCCAAGGTTCTGGATGAACTTCAGTTGGAGCTTCATCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTATTCAATAGCAAGATAATTGAAGGTTCCTCAGTCTACGCAAGTGCCATAGCCAACAGGGTCATTGATGTTTTGGACTGTCAGTACACAGCATCAGTTCCTCATACAAACAGCTACTAG 1449 0.4451 MHEQTGCFDPNTMGENIPSLKDNFPQTLGDPLTPSSPMVVDNTTNTDNGLEENLRLSVEELSFNHHNLQHQDGVTATSTHSQQHLGLNMDNHLVQQVIDVLPYQQSTWDPSTVQELPDIAYANQIEQQQNEQQFQQMETQSFNPSSILDPPYPSPDLLNLIHLPRCSAPSLHTNPTICLTNPTQNTPNFQNPLAFIADLPIGSDNNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTNSRNGSLFGGDEIEGDGSQLDMGVLEFNRVTPTVAKGRGGKATKHFATEKQRREQLNGKYKILRNLIPNPTKIDRASVVGDAIDYIRELIRTVNELKLLVEKKRYGRERCKRPKTEEDGAESCNIKPFGDPDGGIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVLDCQYTASVPHTNSY 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02032 482 Pfam Helix-loop-helix DNA-binding domain 287 333 IPR011598 GO:0046983
Viun3g02032 482 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 351 IPR036638 GO:0046983
Viun3g02032 482 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 333 IPR011598 GO:0046983
Viun3g02032 482 Gene3D - 282 355 IPR036638 GO:0046983
Viun3g02032 482 PANTHER TRANSCRIPTION FACTOR BHLH91 2 474 IPR045895 GO:0006355|GO:0048658
Viun3g02032 482 SMART finulus 290 339 IPR011598 GO:0046983
Viun3g02032 482 CDD bHLH_AtMYC1_like 289 353 IPR045896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02032 Viun-Chr3 16222394 16224837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02032 1 480 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 37.285 2.60e-91 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g02032 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02032 - - gmx:100801349 771.155