Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02004 ATGGTGAAGTTCCTGAAGCCAAACAAGGCGGTGATCGTCCTGCAGGGCCGTTATGCAGGGCGGAAGGCGGTGATCGTCAGGACCTTCGACGACGGAACCAGGGAGCGCCCCTACGGCCACTGTCTGGTCGCCGGAATCAAGAAGTACCCCAGCAAGGTCATCAAGAAAGACTCCGCCAAGAAGACGGCGAAGAAATCGAGGGTGAAGGCTTTTGTGAAGCTGGTGAACTATCAGCACCTCATGCCCACGCGCTACACGCTGGACGTGGATCTCAAGGACGCCGTCAACCCCGACGTCCTCTCCTCCAAGTACAAGAAGGTCACCGCTCTCAAGGAGACCAAGAAGCGCCTCGAGGAGAGGTTCAAGACCGGCAAGAACAGGTGGTTCTTTACCAAACTCAGATTCTGA 408 0.5662 MVKFLKPNKAVIVLQGRYAGRKAVIVRTFDDGTRERPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVNPDVLSSKYKKVTALKETKKRLEERFKTGKNRWFFTKLRF 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02004 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Viun3g02004 135 ProSitePatterns Ribosomal protein L27e signature. 124 135 IPR018262 GO:0003735|GO:0005840|GO:0006412
Viun3g02004 135 Coils Coil 100 127 - -
Viun3g02004 135 Pfam Ribosomal L27e protein family 52 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Viun3g02004 135 FunFam 60S ribosomal protein L27 1 135 - -
Viun3g02004 135 SMART kow_9 4 31 IPR005824 -
Viun3g02004 135 CDD KOW_RPL27 6 88 IPR041991 -
Viun3g02004 135 Pfam KOW motif 7 32 IPR005824 -
Viun3g02004 135 Gene3D - 1 135 IPR038655 -
Viun3g02004 135 SUPERFAMILY Translation proteins SH3-like domain 2 135 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02004 Viun-Chr3 15932038 15932690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02004 1 135 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 82.222 9.22e-80 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02004 K02901 - gmx:100527246 251.136