Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01957 ATGGACTTGAGCGAAGAAGTTAGGGCGGCGCATAAGCGAGAATTCGCCGATTTCTTAGATCAAGATGTGGGAAAGGGCATTTACATGGACGAAATCAAAGCCCTAATCAACCACAAGCGCCACCGTCTCATCATCAACATCTCGGATCTCCACAACTTCCGCGACTTGGGGAACAGGATAATCAGGAGTCCAAGTGAGTACATTCAACCGTTCTGCGATGCGGTGACGGACGCTACTCGTGCTATTGATCCTAAGTATTTGAAGGAAGGAGAACAAGTGCTTGTGGGATTTGAAGGTCCCTTTGTTTCCCGCCGAGTCACGCCAAGGGAGCTTCTTTCTGAATTCATAGGTTCTATGGTCTGTGTTGAGGGCATTGTCACCAAATGTTCTCTTGTAAGGCCGAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACGGGAAACTTCACTTCTCGCGAATATCGTGATATTACCTCTAATTTGGGTTTGCCCACAGGATCTGTTTACCCTACAAGGGATGAAAATGGGAACTTACTTGTGACTGAGTATGGATTGTGCAAATACAAAGATCATCAAACTTTGTCCATTCAAGAAGTTCCTGAGAATTCTGCTCCTGGTCAACTTCCAAGAACAGTGGATGTCATTGTAGAAGATGACCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCAATTGTGGGAATATATAAGGCTCTTGCAGGGAAAAGTAAAGGCAGTGTGAATGGAGTATTCAGGACTGTGCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCACCAATATACAGTCCCGAAGATCTCAAAAACATTAAAAAGATAGCTGAAAGAGATGATGCATTTGACATGCTAAGTAATTCGCTTGCACCTTCTATATATGGGCATTCTTGGATAAAAAAAGCAGTGATTTTGTTGATGCTTAGTGGAGTGGAGAAGAACTTAAAGAATGGCACTCACTTGCGAGGTGACATTAACATGATGATGGTTGGTGACCCCTCTGTTGCCAAGTCTCAACTCTTAAGAGCAATTATGAACATTGCTCCCTTGGCCATATCAACTACAGGCAGGGGTTCTTCTGGAGTTGGTTTGACAGCGGCTGTTACTTCAGATCAAGAAACAGGGGAAAGAAGGCTAGAAGCTGGGGCAATGGTTCTTGCCGACAGGGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATGAAGATCGTGTTGCTATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCTAAAGCTGGTATCCATGCATCACTGAATGCTCGATGCAGTGTGGTTGCAGCTGCAAATCCCATATATGGAACTTATGATCGTTCATTGACTCCAACTAAAAATATTGGACTTCCAGACTCCTTGCTTTCTCGATTTGATCTACTGTTCATTGTGTTAGATCAAATGGATCCTGACATTGATCGTCGAATTTCTGAGCATGTACTTCGTATGCATAGATTTCGTTCTGCCGTTGATGGAGGCGAGGCAACACTTAATGGGAGCTCAGGATACGGAAGAGAAGATGAGGCTGATACGGATTCGTCTATCTTTGTCAAATATAACAGAATGTTACATGGGAAGAAAACTGAAAGAGGTCGCAAACGTGATACGCTTACAATTAAGTTTCTTAAGAAATATATCCACTACGCTAAGCATAGGATTCAACCTGAACTGACTGATGAGGCGTCTGAGAACATTGCCACAGCCTATGCTGAGCTCAGAAATGCAAGCTCAAATGCAAAGACAGGAGGAACACTTCCCATAACTGCCAGAACTTTAGAAACCATCATACGTCTCTCAACAGCTCATGCCAAACTGAAATTGAGCAGAAAGGTTTCGAAGTCTGATGTTGAAGCTGCTTTAAAGGTTTTAAATTTTGCAATATATCACAAAGAACTTACAGAAATGGAAGAGCGAGAGCAAGAGAGGGAGAAAGAGCTAGGCAGGAAGCGCAAGGCTGATCACAATGAAAATGATGGTCCTAATCGAGGTTCTAAAGATACAAGAGGATCAACATTAGGAACAGATGCCATGGAAGTAGATGAGACCCCAGCAGCTGAAGCTAATGTTGGACTCACCCCTGCAAGAATTGAAGCATTTAATTCTCTATTTGGTCAGCATATGCGCGCCAACCGCCTGGATCTCATAGCTATTGCAGACTTAGAGAATGTTATCAACAGAGGGGCAGATTCACCTTACACCGCTGCAGATATACTACTCCTATTAGAGAGGTTGCAAGATGACAATAGAGTGATGATAGTTGATGGAATGGTGCATATGATATCATAA 2331 0.4316 MDLSEEVRAAHKREFADFLDQDVGKGIYMDEIKALINHKRHRLIINISDLHNFRDLGNRIIRSPSEYIQPFCDAVTDATRAIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSEFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGNFTSREYRDITSNLGLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSIQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGIYKALAGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDAFDMLSNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDEDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISEHVLRMHRFRSAVDGGEATLNGSSGYGREDEADTDSSIFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPELTDEASENIATAYAELRNASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQEREKELGRKRKADHNENDGPNRGSKDTRGSTLGTDAMEVDETPAAEANVGLTPARIEAFNSLFGQHMRANRLDLIAIADLENVINRGADSPYTAADILLLLERLQDDNRVMIVDGMVHMIS 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01957 776 SMART AAA_5 331 484 IPR003593 GO:0016887
Viun3g01957 776 Pfam MCM OB domain 109 238 IPR033762 -
Viun3g01957 776 SUPERFAMILY Nucleic acid-binding proteins 13 259 IPR012340 -
Viun3g01957 776 MobiDBLite consensus disorder prediction 650 678 - -
Viun3g01957 776 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 8 667 IPR031327 GO:0003677|GO:0005524|GO:0032508
Viun3g01957 776 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Viun3g01957 776 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g01957 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g01957 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g01957 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g01957 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g01957 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g01957 776 Pfam MCM AAA-lid domain 556 639 IPR041562 -
Viun3g01957 776 Gene3D - 135 189 - -
Viun3g01957 776 SMART mcm 104 643 IPR031327 GO:0003677|GO:0005524|GO:0032508
Viun3g01957 776 FunFam DNA helicase 135 189 - -
Viun3g01957 776 FunFam DNA helicase 5 104 - -
Viun3g01957 776 Pfam MCM P-loop domain 277 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun3g01957 776 Pfam MCM N-terminal domain 12 83 IPR027925 -
Viun3g01957 776 MobiDBLite consensus disorder prediction 650 701 - -
Viun3g01957 776 CDD MCM3 292 641 - -
Viun3g01957 776 Gene3D - 109 239 IPR012340 -
Viun3g01957 776 Gene3D - 3 99 - -
Viun3g01957 776 Gene3D - 271 663 IPR027417 -
Viun3g01957 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Viun3g01957 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Viun3g01957 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 630 645 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Viun3g01957 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Viun3g01957 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Viun3g01957 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 655 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01957 Viun-Chr3 15244414 15250083 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01957 1 578 Core DNA Replication Machinery Family AT5G46280 81.724 0.0 975
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01957 K02541 - gmx:100811545 1385.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01957 3 15244414 15250083 Viun3g01957 3 15244414 15250083 ECH