Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01954 ATGCAGACACAGGAATATTTTCTCCCGGAGAAGATGGTTCTTCCTTTGGCAGATGACTCCATTGATGCTAATGCTCATATGCATGCTCCACTTGCTTCTGCCTTTGATGCTTTTTTACCTTCAGGTGTGGGGCAGATAACACCCTTTGAAAGATTTAAATTGCAGCCCTCTGAGGCATGCCCCAAGAATTTTGTTATCTTTGATCAAACAGATCAGCGAAGTAGGATTATGTTCCATCCTGCAATGACCTACAAATTTAACAGTCCTGGTTTGAATGTTCATGCTAATTTTTCTCAAGATTTTGAGAAGAATAAAGTCAATCAAATAGAAAGAGAATTGTCATCTCCTTTTGAAGAAGATCCTAATGACATTGATGCATTGTTGAGCATAGGAGCTGATGACCTAGAAGACTTTGATGAGGAAGAAGTAAGCACAGCAAGGACTCATGAAAATTATGAAAATTTGTCTGATACTTGCTCCAGTTATTGCTCAAAATCAAGGAAGAAGAGGCTGTCATCATCTTCTGTACACAAGTCTTCTGAAGCTAATGATGGGAATAACAGGGAGATAAAGAGGATGGTGAGGATATTGAGAAAGATTGTGCCTGGTGGAGGTAATCAAATGGATTCTGTTGCTGTTTTAGATGAAGCTGTTAAATATCTTAAGTCTCTTAAAGTTGAGGTGGAACAATTTGGAGTTGAACCATGA 708 0.387 MQTQEYFLPEKMVLPLADDSIDANAHMHAPLASAFDAFLPSGVGQITPFERFKLQPSEACPKNFVIFDQTDQRSRIMFHPAMTYKFNSPGLNVHANFSQDFEKNKVNQIERELSSPFEEDPNDIDALLSIGADDLEDFDEEEVSTARTHENYENLSDTCSSYCSKSRKKRLSSSSVHKSSEANDGNNREIKRMVRILRKIVPGGGNQMDSVAVLDEAVKYLKSLKVEVEQFGVEP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01954 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 224 IPR011598 GO:0046983
Viun3g01954 235 PANTHER TRANSCRIPTION FACTOR BHLH145 24 234 IPR037546 -
Viun3g01954 235 Gene3D - 187 232 IPR036638 GO:0046983
Viun3g01954 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 231 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01954 Viun-Chr3 15212153 15215114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01954 16 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G29950 40.984 9.07e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01954 - - vra:106768906 429.098