Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01947 ATGGCGAAAAAGGCAAAAGGGTCTCACTCAACTTCTTCGGCCTCTGCCTCTTCCGCTTCTGGTAAACTAGTTTTGAGGATTAAATCAAATGAGGGAATCAAGAGATCAGTGCGGCAGACTAATTCAAGAAAGAAACCCAAAGCAAAACTAAAGAAGAACAGGCGGAAGTTTGATGCTATGAAACCGAAGAAACCTCCTACAGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGAAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATGTAGCAACAGACAAACGTGCAGAGTTTGATAGAGCAATGGCAGAATATAACAAGAAAAGAGAAAGTGGAGAGTTTGATGAAACTGACGAAGAATCAGGGTCTGATGAGTAA 453 0.4062 MAKKAKGSHSTSSASASSASGKLVLRIKSNEGIKRSVRQTNSRKKPKAKLKKNRRKFDAMKPKKPPTAFFYFLEDFRKEFQEKNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDVATDKRAEFDRAMAEYNKKRESGEFDETDEESGSDE 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01947 150 MobiDBLite consensus disorder prediction 130 150 - -
Viun3g01947 150 MobiDBLite consensus disorder prediction 39 59 - -
Viun3g01947 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 36 148 IPR031061 -
Viun3g01947 150 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 62 131 IPR009071 -
Viun3g01947 150 SUPERFAMILY HMG-box 54 134 IPR036910 -
Viun3g01947 150 Gene3D High mobility group box domain 56 147 IPR036910 -
Viun3g01947 150 Pfam HMG (high mobility group) box 62 131 IPR009071 -
Viun3g01947 150 SMART hmgende2 61 132 IPR009071 -
Viun3g01947 150 MobiDBLite consensus disorder prediction 1 62 - -
Viun3g01947 150 CDD HMG-box_AtHMGB1-like 63 123 - -
Viun3g01947 150 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01947 Viun-Chr3 15144551 15153677 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Viun3g01947 HMG_box 1.9e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01947 - - vum:124844238 256.529