Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01937 ATGATGCTCTCCCTCAAGATTAGTTTGACTACAGTCATTGTTCTTTCCATTGTATCCATTGTTTCCCATGCTGAAACAAGCTTGGAGGTTGAAATTGAAGCCATGAAAGCTTTCAAGAACTCCATCACTGGTGACCCAAGTGGGGCTCTAGCAGACTGGGTAGACAGTCGCAACCACTGCAACTGGACTGGCATTACATGTGACCCATCTTCAAATCATGTCATTGCTATTTCTCTGGTTAGTCTTCAACTACAAGGGAAGATTTCACCTTTCCTTGGGAACATTTCAGGCCTTCAGGTTTTTGATATAACTTCAAACTCATTCACTGGCTACATTCCTGCTGAGCTTGGTCTTAATACTCAACTTACACAACTGTTTCTTGTTGACAATGCTCTCTCAGGTCCAATCCCTCCACAATTAGGTAGCCTTAAAAGCCTGCAGTATTTGGATTTAGGTAACAACTTCTTGAATGGAAGCCTCCCTGAGAGCATATTCAACTGCACTTCTTTGTTGGGTATTGCTTTTAATTTCAACAATCTTACTGGCAGAATCCCATCCAACATTGGGAATCTAGTTAACCTTGTACAGATAGCAGGTTTTGGAAATAATTTGGTAGGATCTATACCTCTTTCAGTAGGTCAGTTAGGAGCTTTGCTAGCTCTTGATTTTAGCCAAAACAAGTTATCAGGTGTAATACCTCGAGAGATTGGAAACCTGAAACACTTAGAATACCTTGAATTGTTCCAGAATTCCTTGACTGGGAAAATTCCTTTTGAGCTTGGTAAGTGTAGCAATCTTTCAAGCCTTGAGTTATCCGATAATCAGCTTATTGGAAGTATTCCTCCTGAGCTAGGAAATTTAGTTAAGTTGGAGAAATTGAAGTTACACAAGAATAACTTGAATTCCACCATCCCTTCAGCCATATTCCAGTTGAAATCATTAAAAAATCTAGGCCTCTCACAGAATAACTTAGAGGGAACAATATCTTCGGAGATTGGATATATGAACTCCTTGCAGGTACTAACCCTGCATTTAAATAAGTTAACTGGGGAGATCCCTTCATCAATAACAAACTTGACAAACTTGACATATCTGTCAATGAGCCAGAATCTCCTCTCAGGTGAACTTCCTTCAAACTTGGGTGTGCTTCGTAATTTGCAGTTTCTTGTTTTGAACACAAACCACTTTACTGGATCCATCCCCCCTAGCCTTACCAATTGTACTGGACTGGTAAATGTAAGTTTGTCTTTTAATGCTTTAAGTGGTAAAATTCCTGAGGGTTTTTCCAGGTCACCAAATCTTACTTTCCTGTCTCTTGCGTCAAACAAAATGACTGGGGAAATCCCAGATGACCTCTATAACTGCTCAAATCTTAGCACTCTAAGTTTGGCAATGAATAACTTCAGTGGATTGATAAAATCAGGTATCCAAAACCTGTCTAACCTTCAACGCCTACAGTTGAATGTAAATTCTTTCACAGGACCAATTCCACCAGAGATTGGAAACTTGAATCAACTCATTACTCTATCCCTCTCTGAAAATAAGTTTTCCGGTCAAATTCCTCCAGAACTGTCCAAACTTTCTCGCCTACAGGGGCTCACTCTTCATGCCAATTTATTAGAAGGTACAATACCTGATAAGCTCTCCGATTTGAAAGGACTAACCGAACTTTTCCTGCATCAAAACAAGTTGGTTGGGCAAATACCTGATACTCTCTCAAAGCTTGAGATGCTTTCCTACTTAGACCTTCATGGCAACAAACTTAATGGGTCCATTCCAAGAAGCATGGGGAAGCTAAATCAACTTCTAGTTCTGGATCTCTCTCACAACCAGCTTACAGGATCAATTCCGGGAGATGTCATTGCAAAATTAAAAGGCTTGCAGATGTATCTCAACCTTTCTTACAACCACTTGGTCGGAAATGTTTCAACTGAGTTGGGCATGTTGGAAATGATACAGGCTATTGACATTTCAAACAATAATCTTTCGGGCTTCATTCCCAAAACACTTGCTGGGTGCAGAAATCTGTTTAATCTTGATTTTTCAGGAAACAGTATTTCAGGTCCTATTCCCGCAGAAGCGTTTAGTCACATGGACTTGCTTGAAAGCTTAAACCTCTCAAGGAACCACTTAGATGGTGAAATCCCTGATATACTGGCAGAACTTGATCATCTTAGTTCCCTAGATCTTTCTCAGAATGACTTGAAGGGAATTATTCCTGAGGGCTTTGCCAACCTTTCCAACTTGGTGCATCTCAACCTTTCCTTCAATCAACTTGAAGGTCATGTTCCTAAGACCGGAGTATTTGCACAAATCAATGCATCTAGTGTGATGGGAAACCAGGATCTTTGTGGAGCTCAGTTCCTACCGCCATGCAGGAAGTCAAAACACTCACTTTCCATGAAGGGCATAATTATTATTGCTTCACTTGGATCTCTAGCTATACTTCTAGTTTTAGTGATTCTAATCCTCACTCGTGGCACCAAACTCCGCAATTCTAAAGAAAGAGACAGCAGTGTAAATCATGAACCAGACTACAGTTCAACATTGGCACTTAAAAGGTTCAGTACAAAGGAATTGGAGAATGCCACTAGTTTTTTCAGTGCTGACAGCATCATTGGTGCTAGCAGTTTGAGCACGGTTTACAAGGGTCAAATGGAAGATGGCCAGGTTGTTGCCATAAAAAGGTTGAATTTGCAACAATTCTCTTCCAATACTGACAAGATCTTCAAGAGAGAAGCCAACACCTTGAGCCAGTTGAGACATAGGAATTTGATCAAAGTACTTGGATATGCCTGGCAGAGCGGGAAAATGAAGGCTTTGGTTCTGGAGTACATGGAAAATGGAAATTTGGATAGCATCATACATGACAACGGGGTAGATCAGTCTGTGATCCCTAGGTGGACATTAGATGAAAGAGTCCGAGTCTTCATATCTATTGCTGAAGCATTGGATTATTTGCACTCGGGTTATCATACTCCCATTGTGCACTGTGATTTAAAGCCTTCCAACATTCTTTTAGATAGAGACTGGGAAGCTCATGTCAGTGACTTTGGGACAGCTCGCATACTTGGTCTTCATCTACAAGAGGGTAGTACCCTTTCGTCGTCAGCAGCTGTGCAAGGCACAGTTGGTTACATGGCACCAGAATTTGCCTACACGAGGAAAGTGACAACTAAAGCAGATGTGTTCAGCTTTGGTATCATAGTAATGGAGTTCCTAACAAAAAGAAGGCCGACAGGACTCTCGGAAGAGAATGGTTTGCCAATCACTTTGCGTGAGTTAGTGGCAAAAGCCCTTGCAGATGGAACAGAACAACTTATGAATATTGTGGATCCTATGTTGACCTGGAATGTAACAAAAGACTATGATGAAGTGTTGGCAGAGCTCTTTAAGCTATCTCTGTGCTGCACCATACCTGATCCTGAACAGAGACCCAATATGAATGAGGTGTTATCTGCCCTTGTGAAGCTTCAAACAACACTGTCTTGTTAA 3495 0.4109 MMLSLKISLTTVIVLSIVSIVSHAETSLEVEIEAMKAFKNSITGDPSGALADWVDSRNHCNWTGITCDPSSNHVIAISLVSLQLQGKISPFLGNISGLQVFDITSNSFTGYIPAELGLNTQLTQLFLVDNALSGPIPPQLGSLKSLQYLDLGNNFLNGSLPESIFNCTSLLGIAFNFNNLTGRIPSNIGNLVNLVQIAGFGNNLVGSIPLSVGQLGALLALDFSQNKLSGVIPREIGNLKHLEYLELFQNSLTGKIPFELGKCSNLSSLELSDNQLIGSIPPELGNLVKLEKLKLHKNNLNSTIPSAIFQLKSLKNLGLSQNNLEGTISSEIGYMNSLQVLTLHLNKLTGEIPSSITNLTNLTYLSMSQNLLSGELPSNLGVLRNLQFLVLNTNHFTGSIPPSLTNCTGLVNVSLSFNALSGKIPEGFSRSPNLTFLSLASNKMTGEIPDDLYNCSNLSTLSLAMNNFSGLIKSGIQNLSNLQRLQLNVNSFTGPIPPEIGNLNQLITLSLSENKFSGQIPPELSKLSRLQGLTLHANLLEGTIPDKLSDLKGLTELFLHQNKLVGQIPDTLSKLEMLSYLDLHGNKLNGSIPRSMGKLNQLLVLDLSHNQLTGSIPGDVIAKLKGLQMYLNLSYNHLVGNVSTELGMLEMIQAIDISNNNLSGFIPKTLAGCRNLFNLDFSGNSISGPIPAEAFSHMDLLESLNLSRNHLDGEIPDILAELDHLSSLDLSQNDLKGIIPEGFANLSNLVHLNLSFNQLEGHVPKTGVFAQINASSVMGNQDLCGAQFLPPCRKSKHSLSMKGIIIIASLGSLAILLVLVILILTRGTKLRNSKERDSSVNHEPDYSSTLALKRFSTKELENATSFFSADSIIGASSLSTVYKGQMEDGQVVAIKRLNLQQFSSNTDKIFKREANTLSQLRHRNLIKVLGYAWQSGKMKALVLEYMENGNLDSIIHDNGVDQSVIPRWTLDERVRVFISIAEALDYLHSGYHTPIVHCDLKPSNILLDRDWEAHVSDFGTARILGLHLQEGSTLSSSAAVQGTVGYMAPEFAYTRKVTTKADVFSFGIIVMEFLTKRRPTGLSEENGLPITLRELVAKALADGTEQLMNIVDPMLTWNVTKDYDEVLAELFKLSLCCTIPDPEQRPNMNEVLSALVKLQTTLSC 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01937 1164 Pfam Leucine Rich Repeat 145 167 IPR001611 GO:0005515
Viun3g01937 1164 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 667 792 - -
Viun3g01937 1164 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Viun3g01937 1164 Gene3D Phosphorylase Kinase; domain 1 827 945 - -
Viun3g01937 1164 SMART serkin_6 867 1162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01937 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 28 182 - -
Viun3g01937 1164 SMART LRR_sd22_2 119 151 - -
Viun3g01937 1164 SMART LRR_sd22_2 599 629 - -
Viun3g01937 1164 SMART LRR_sd22_2 239 268 - -
Viun3g01937 1164 SMART LRR_sd22_2 722 748 - -
Viun3g01937 1164 SMART LRR_sd22_2 551 580 - -
Viun3g01937 1164 SMART LRR_sd22_2 359 382 - -
Viun3g01937 1164 ProSiteProfiles Protein kinase domain profile. 867 1162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01937 1164 Pfam Leucine rich repeat 653 711 IPR001611 GO:0005515
Viun3g01937 1164 Pfam Leucine rich repeat 529 588 IPR001611 GO:0005515
Viun3g01937 1164 Pfam Leucine rich repeat 264 324 IPR001611 GO:0005515
Viun3g01937 1164 Pfam Leucine rich repeat 720 759 IPR001611 GO:0005515
Viun3g01937 1164 FunFam Piriformospora indica-insensitive protein 2 282 375 - -
Viun3g01937 1164 Gene3D Transferase(Phosphotransferase) domain 1 946 1163 - -
Viun3g01937 1164 SUPERFAMILY Protein kinase-like (PK-like) 843 1159 IPR011009 -
Viun3g01937 1164 SUPERFAMILY L domain-like 31 305 - -
Viun3g01937 1164 SUPERFAMILY L domain-like 230 520 - -
Viun3g01937 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 946 1163 - -
Viun3g01937 1164 SMART LRR_typ_2 551 575 IPR003591 -
Viun3g01937 1164 SMART LRR_typ_2 746 771 IPR003591 -
Viun3g01937 1164 SMART LRR_typ_2 359 381 IPR003591 -
Viun3g01937 1164 SMART LRR_typ_2 599 623 IPR003591 -
Viun3g01937 1164 SMART LRR_typ_2 698 721 IPR003591 -
Viun3g01937 1164 SMART LRR_typ_2 287 311 IPR003591 -
Viun3g01937 1164 SMART LRR_typ_2 479 503 IPR003591 -
Viun3g01937 1164 SMART LRR_typ_2 215 239 IPR003591 -
Viun3g01937 1164 SMART LRR_typ_2 722 745 IPR003591 -
Viun3g01937 1164 SMART LRR_typ_2 383 407 IPR003591 -
Viun3g01937 1164 SMART LRR_typ_2 143 167 IPR003591 -
Viun3g01937 1164 PRINTS Leucine-rich repeat signature 602 615 - -
Viun3g01937 1164 PRINTS Leucine-rich repeat signature 722 735 - -
Viun3g01937 1164 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 406 1156 - -
Viun3g01937 1164 FunFam MDIS1-interacting receptor like kinase 2 isoform A 183 281 - -
Viun3g01937 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 828 945 - -
Viun3g01937 1164 Pfam Protein kinase domain 869 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01937 1164 CDD STKc_IRAK 873 1158 - -
Viun3g01937 1164 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Viun3g01937 1164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672|GO:0006468
Viun3g01937 1164 SUPERFAMILY L domain-like 474 792 - -
Viun3g01937 1164 Gene3D Ribonuclease Inhibitor 266 427 IPR032675 -
Viun3g01937 1164 Gene3D Ribonuclease Inhibitor 506 796 IPR032675 -
Viun3g01937 1164 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 382 645 - -
Viun3g01937 1164 Gene3D Ribonuclease Inhibitor 428 505 IPR032675 -
Viun3g01937 1164 Gene3D Ribonuclease Inhibitor 192 265 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01937 Viun-Chr3 14843263 14847823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01937 21 1159 Receptor kinase-like Gene Family AT5G46330 54.228 0.0 1157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun3g01937 Pkinase 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01937 K13420 - gmx:100788119 1938.31