LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g01924	ATGGAAAAGGAACCTCTACTCCCATATTTCAGCCCCAGAAAGAAGCCCCTGGCATTGTCACCACTACGTCCCTTGCCAGAGCACGAAGACATGGTTCATCCAATGACCCCCATGGAATTCAAGGACCGTCTCATCTTTGGACCTGTTTGTGCTACCCCAAGGGACCCTACACCTTTGGCTGATGCCTTAACACTCCCCCACAATTCCCCAAAATGTTCCTCTTCTACCTCGCAGGACTGTGCATCGCCTTCACGGTTTGATTCTCAGTCGCAACAACCATCCTCTTGGCTCCTTGACCCCAATTACTCCTGCCGGAAAACAAACCTTCACCGCTCCAAAACCGCGCCGGCCATGGCGGTGATCAGCGATTTCAACCCCCAATCCTCTGTGCCAAGGCCGCAATTTGGCAGCCAGAGTGTTGTGCGCCAGGGTGTGATTCTTCTTGCTCTTTATTTGGCATTAGGGGTTGTCATTTATTGGTTCAATCGTAATAATTTCTCAGCTTCCGAGACTCATCCTGTAGTTGATGCATTGTATTTTTGTATAGTCACAATGTGCACAATAGGATATGGTGACATCACTCCGAATAGCACAGCCACTAAACTTTTCTCTATATTGTTTGTATTGGTGGGGTTTGGATTTATAGACATATTGCTGAGTGGGATGGTTAGCTATGTGCTTGATTTGCAGGAGAGTCATATGTTGACAGCAGTGAAGGGGAGGAGGGGTGAGAAGGATGGAAAGTCTTATATAATTGATGTGAAGAAAGGGAGGATGAGGATCCGTTTGAAGGTAGCGTTGGCGTTGGGAGTTGTGGTGATTTGTATTGGGGTAGGTGTGGGGGTTATGCATTTTGTGGAGAAGCTTGGATGGTTGGACTCTTTTTATCTTTCAGTTATGTCGGTTACTACGGTCGGGTATGGAGACCATGCTTTCAAGACCATGCATGGCCGGATCTTTGCTGCAATTTGGTTGCTCGTGTCAACTCTTGCCGTGGCTCGAGCGTTCCTCTATTTGGCTGAGGCAAGAGTGGATAAGCGGCACAGGATGATGGCGAAGTGGATTCTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCAGACATAGACAACAATGGCTTTGTGAGGGAAGATTTGGATGGAGGTCATGGGTCAACAAGTAGAGAGAATATTGAAACAATGATGTCACAAATGGCAAAATAG	1206	0.4718	MEKEPLLPYFSPRKKPLALSPLRPLPEHEDMVHPMTPMEFKDRLIFGPVCATPRDPTPLADALTLPHNSPKCSSSTSQDCASPSRFDSQSQQPSSWLLDPNYSCRKTNLHRSKTAPAMAVISDFNPQSSVPRPQFGSQSVVRQGVILLALYLALGVVIYWFNRNNFSASETHPVVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFIDILLSGMVSYVLDLQESHMLTAVKGRRGEKDGKSYIIDVKKGRMRIRLKVALALGVVVICIGVGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDHAFKTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVREDLDGGHGSTSRENIETMMSQMAK	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g01924	401	FunFam	Two-pore potassium channel 5	129	239	-	-
	Viun3g01924	401	MobiDBLite	consensus disorder prediction	67	99	-	-
	Viun3g01924	401	SUPERFAMILY	Voltage-gated potassium channels	140	226	-	-
	Viun3g01924	401	SUPERFAMILY	Voltage-gated potassium channels	255	359	-	-
	Viun3g01924	401	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	147	374	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Viun3g01924	401	MobiDBLite	consensus disorder prediction	65	99	-	-
	Viun3g01924	401	PRINTS	Two pore domain K+ channel signature	183	211	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Viun3g01924	401	PRINTS	Two pore domain K+ channel signature	303	312	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Viun3g01924	401	Gene3D	-	248	360	-	-
	Viun3g01924	401	Pfam	Ion channel	147	226	IPR013099	-
	Viun3g01924	401	Pfam	Ion channel	271	340	IPR013099	-
	Viun3g01924	401	Gene3D	-	139	238	-	-
	Viun3g01924	401	FunFam	Two-pore potassium channel 3	248	362	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g01924	Viun-Chr3	14696962	14707676	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g01924	4	378	Ion Channels	AT4G18160	62.755	1.33e-159	454

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g01924	K05389		-	gmx:100804249	660.603