Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01906 ATGCCTCAAACAAATATGATGAAGGCCAAATCTAACTTGCATAAAAGAAAGTCATCCTTGATTAGTGATGGACATCCTTCTGCATTCAAGCAGCCAGAGGGTAACACTATTAGAGAAGAAAACTATAATGAAGATGAAGATAAAAATGTTATTGGTAAGTACATGATCAAAGAAAAAGCAGGAGGAGAATATGATGCAGTGGATGACTATCAAGATAATGCAGACTACTTACCAGAAGATAAAGGTCCAAATACTACAGAGGAGCAACCTCACAAGGGTATGGTCACAAGATACTCGGATGAAAAAAATAACCCTTCAACTCGACATTTCATCCATGGATATCACTTAATACAAGGACAGATGAACCATGGTATGGAAGACTATATTTTCGCTCAACATAGGAATCTCGATGGTTATGACTTAGGATTGTATGCAATATTTGATGGTCACTCCGGTCATGAAGTTGCAAAATACTTGCGAAACCATCTATTCGAAAATATACTGAGTGAGCCTGGTTTCTGGGAAAATCCAGTGCAAGCTATTAAGAAAGCATGCAAAGCAACGGATGATGAGGTTTTAGAAAACGTAGCTGATTCACGTGGAGGATCAACAGCAGTTGCAGCAATATTAGTCAATGGAGTAAAGCTACTGGTAGCCAATGTTGGTGATTCTAGAGCAATATCATGCAAAAATGGTCGAGCAAACCCACTTACTGTGGACCATGATCCAGAGAAGGAAAAAGCTCTTGTTGAGAGCAGAGGAGGTTTTGTGTCCAAGAGACCTGGGAATGTTCCAAGAGTGGATGGACAATTAGCAATGACAAGGGCATTTGGAGATGGAAAACTAAAGAAGCACATTACGGCAGAACCGGATGTGACCATTGAGAAGATTGATGAAGACACTGAATTCATTATTTTGGCAAGTGATGGTGTGTGGAAGGTGATGACAAATCAAGAGGCTTGTGACTGTATCAAGAATGTGGACGGTGCGGAAAAAGCATCTAAGAAGTTAATTAAAGAAGCTAAATCTCTAGGAAGCTATGATGATATTTCATGCATAGTTATAATGTTCTAG 1074 0.3929 MPQTNMMKAKSNLHKRKSSLISDGHPSAFKQPEGNTIREENYNEDEDKNVIGKYMIKEKAGGEYDAVDDYQDNADYLPEDKGPNTTEEQPHKGMVTRYSDEKNNPSTRHFIHGYHLIQGQMNHGMEDYIFAQHRNLDGYDLGLYAIFDGHSGHEVAKYLRNHLFENILSEPGFWENPVQAIKKACKATDDEVLENVADSRGGSTAVAAILVNGVKLLVANVGDSRAISCKNGRANPLTVDHDPEKEKALVESRGGFVSKRPGNVPRVDGQLAMTRAFGDGKLKKHITAEPDVTIEKIDEDTEFIILASDGVWKVMTNQEACDCIKNVDGAEKASKKLIKEAKSLGSYDDISCIVIMF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01906 357 ProSiteProfiles PPM-type phosphatase domain profile. 111 357 IPR001932 -
Viun3g01906 357 PANTHER PROTEIN PHOSPHATASE 79 355 IPR015655 GO:0004722|GO:0006470
Viun3g01906 357 Gene3D - 109 357 IPR036457 -
Viun3g01906 357 MobiDBLite consensus disorder prediction 73 105 - -
Viun3g01906 357 CDD PP2Cc 110 355 IPR001932 -
Viun3g01906 357 Pfam Protein phosphatase 2C 123 349 IPR001932 -
Viun3g01906 357 MobiDBLite consensus disorder prediction 81 105 - -
Viun3g01906 357 MobiDBLite consensus disorder prediction 1 50 - -
Viun3g01906 357 SMART PP2C_4 101 355 IPR001932 -
Viun3g01906 357 FunFam Probable protein phosphatase 2C 39 103 357 - -
Viun3g01906 357 SUPERFAMILY PP2C-like 107 357 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01906 Viun-Chr3 14562082 14567348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01906 108 357 PP2C-type Phosphatase Gene Family AT3G15260 57.769 3.33e-103 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01906 - - gmx:100814772 594.734