Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01904 ATGCCTCAAACAAATATGATGAAGGCCAAATCTAACTTGCATAAAAGAAAGTCATCCTTGATTAGTGATGGACATCCTTCTGCATTCAAGAGAATATCAAGAAGAGGAAGCTATGTAGACTCTTTTGAAAGAAAGCAGCCAGAGGGTAACACTATTAGAGAAGAAAACTATAATGAAGATGAAGATAAAAATGTTATTGGTAAGTACATGATCAAAGAAAAAGCAGGAGGAGAATATGATGCAGTGGATGACTATCAAGATAATGCAGACTACTTACCAGAAGATAAAGGTCCAAATACTACAGAGGAGCAACCTCACAAGGGTATGGTCACAAGATACTCGGATGAAAAAAATAACCCTTCAACTCGACATTTCATCCATGGATATCACTTAATACAAGGACAGATGAACCATGGTATGGAAGACTATATTTTCGCTCAACATAGGAATCTCGATGGTTATGACTTAGGATTGTATGCAATATTTGATGGTCACTCCGGTCATGAAGTTGCAAAATACTTGCGAAACCATCTATTCGAAAATATACTGAGTGAGCCTGGTTTCTGGGAAAATCCAGTGCAAGCTATTAAGAAAGCATGCAAAGCAACGGATGATGAGGTTTTAGAAAACGTAGCTGATTCACGTGGAGGATCAACAGCAGTTGCAGCAATATTAGTCAATGGAGTAAAGCTACTGGTAGCCAATGTTGGTGATTCTAGAGCAATATCATGCAAAAATGGTCGAGCAAACCCACTTACTGTGGACCATGATCCAGAGAAGGAAAAAGCTCTTGTTGAGAGCAGAGGAGGTTTTGTGTCCAAGAGACCTGGGAATGTTCCAAGAGTGGATGGACAATTAGCAATGACAAGGGCATTTGGAGATGGAAAACTAAAGAAGCACATTACGGCAGAACCGGATGTGACCATTGAGAAGATTGATGAAGACACTGAATTCATTATTTTGGCAAGTGATGGTGTGTGGAAGGTGATGACAAATCAAGAGGCTTGTGACTGTATCAAGAATGTGGACGGTGCGGAAAAAGCATCTAAGAAGTTAATTAAAGAAGCTAAATCTCTAGGAAGCTATGATGATATTTCATGCATAGTTATAATGTTCTAG 1119 0.3905 MPQTNMMKAKSNLHKRKSSLISDGHPSAFKRISRRGSYVDSFERKQPEGNTIREENYNEDEDKNVIGKYMIKEKAGGEYDAVDDYQDNADYLPEDKGPNTTEEQPHKGMVTRYSDEKNNPSTRHFIHGYHLIQGQMNHGMEDYIFAQHRNLDGYDLGLYAIFDGHSGHEVAKYLRNHLFENILSEPGFWENPVQAIKKACKATDDEVLENVADSRGGSTAVAAILVNGVKLLVANVGDSRAISCKNGRANPLTVDHDPEKEKALVESRGGFVSKRPGNVPRVDGQLAMTRAFGDGKLKKHITAEPDVTIEKIDEDTEFIILASDGVWKVMTNQEACDCIKNVDGAEKASKKLIKEAKSLGSYDDISCIVIMF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01904 372 MobiDBLite consensus disorder prediction 36 59 - -
Viun3g01904 372 FunFam Probable protein phosphatase 2C 39 118 372 - -
Viun3g01904 372 SMART PP2C_4 116 370 IPR001932 -
Viun3g01904 372 MobiDBLite consensus disorder prediction 1 59 - -
Viun3g01904 372 ProSiteProfiles PPM-type phosphatase domain profile. 126 372 IPR001932 -
Viun3g01904 372 PANTHER PROTEIN PHOSPHATASE 89 370 IPR015655 GO:0004722|GO:0006470
Viun3g01904 372 CDD PP2Cc 125 370 IPR001932 -
Viun3g01904 372 Gene3D - 124 372 IPR036457 -
Viun3g01904 372 Pfam Protein phosphatase 2C 138 364 IPR001932 -
Viun3g01904 372 MobiDBLite consensus disorder prediction 88 107 - -
Viun3g01904 372 SUPERFAMILY PP2C-like 122 372 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01904 Viun-Chr3 14562082 14567348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01904 123 372 PP2C-type Phosphatase Gene Family AT3G15260 57.769 4.59e-103 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01904 - - gmx:100814772 620.542