Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01902 ATGCCTCAAACAAATATGATGAAGGCCAAATCTAACTTGCATAAAAGAAAGTCATCCTTGATTAGTGATGGACATCCTTCTGCATTCAAGAAGAGAATATCAAGAAGAGGAAGCTATGTAGACTCTTTTGAAAGAAAGCAGCCAGAGGGTAACACTATTAGAGAAGAAAACTATAATGAAGATGAAGATAAAAATGTTATTGGTAAGTACATGATCAAAGAAAAAGCAGGAGGAGAATATGATGCAGTGGATGACTATCAAGATAATGCAGACTACTTACCAGAAGATAAAGGTCCAAATACTACAGAGGAGCAACCTCACAAGGGTATGGTCACAAGATACTCGGATGAAAAAAATAACCCTTCAACTCGACATTTCATCCATGGATATCACTTAATACAAGGACAGATGAACCATGGTATGGAAGACTATATTTTCGCTCAACATAGGAATCTCGATGGTTATGACTTAGGATTGTATGCAATATTTGATGGTCACTCCGGTCATGAAGTTGCAAAATACTTGCGAAACCATCTATTCGAAAATATACTGAGTGAGCCTGGTTTCTGGGAAAATCCAGTGCAAGCTATTAAGAAAGCATGCAAAGCAACGGATGATGAGGTTTTAGAAAACGTAGCTGATTCACGTGGAGGATCAACAGCAGTTGCAGCAATATTAGTCAATGGAGTAAAGCTACTGGTAGCCAATGTTGGTGATTCTAGAGCAATATCATGCAAAAATGGTCGAGCAAACCCACTTACTGTGGACCATGATCCAGAGAAGGAAAAAGCTCTTGTTGAGAGCAGAGGAGGTTTTGTGTCCAAGAGACCTGGGAATGTTCCAAGAGTGGATGGACAATTAGCAATGACAAGGGCATTTGGAGATGGAAAACTAAAGAAGCACATTACGGCAGAACCGGATGTGACCATTGAGAAGATTGATGAAGACACTGAATTCATTATTTTGGCAAGTGATGGTGTGTGGAAGGTGATGACAAATCAAGAGGCTTGTGACTGTATCAAGAATGTGGACGGTGCGGAAAAAGCATCTAAGAAGTTAATTAAAGAAGCTAAATCTCTAGGAAGCTATGATGATATTTCATGCATAGTTATAATGTTCTAG 1122 0.3904 MPQTNMMKAKSNLHKRKSSLISDGHPSAFKKRISRRGSYVDSFERKQPEGNTIREENYNEDEDKNVIGKYMIKEKAGGEYDAVDDYQDNADYLPEDKGPNTTEEQPHKGMVTRYSDEKNNPSTRHFIHGYHLIQGQMNHGMEDYIFAQHRNLDGYDLGLYAIFDGHSGHEVAKYLRNHLFENILSEPGFWENPVQAIKKACKATDDEVLENVADSRGGSTAVAAILVNGVKLLVANVGDSRAISCKNGRANPLTVDHDPEKEKALVESRGGFVSKRPGNVPRVDGQLAMTRAFGDGKLKKHITAEPDVTIEKIDEDTEFIILASDGVWKVMTNQEACDCIKNVDGAEKASKKLIKEAKSLGSYDDISCIVIMF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01902 373 SMART PP2C_4 117 371 IPR001932 -
Viun3g01902 373 Gene3D - 125 373 IPR036457 -
Viun3g01902 373 ProSiteProfiles PPM-type phosphatase domain profile. 127 373 IPR001932 -
Viun3g01902 373 MobiDBLite consensus disorder prediction 89 121 - -
Viun3g01902 373 CDD PP2Cc 126 371 IPR001932 -
Viun3g01902 373 FunFam Probable protein phosphatase 2C 39 119 373 - -
Viun3g01902 373 Pfam Protein phosphatase 2C 139 365 IPR001932 -
Viun3g01902 373 PANTHER PROTEIN PHOSPHATASE 87 371 IPR015655 GO:0004722|GO:0006470
Viun3g01902 373 MobiDBLite consensus disorder prediction 97 121 - -
Viun3g01902 373 MobiDBLite consensus disorder prediction 1 60 - -
Viun3g01902 373 MobiDBLite consensus disorder prediction 28 60 - -
Viun3g01902 373 SUPERFAMILY PP2C-like 123 373 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01902 Viun-Chr3 14562082 14567348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01902 124 373 PP2C-type Phosphatase Gene Family AT3G15260 57.769 3.32e-103 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01902 - - gmx:100814772 627.091